BAC Information

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BAC

Clone NameB6Ng01-334B18
Chromosome13 (Build37)5 (Build37)
Map Location 10,935,205 - 10,935,61083,234,755 - 83,235,952
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneChrm3
Downstream geneLOC100039648, Zp4, Ryr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334B18.bB6Ng01-334B18.g
ACCGA119695GA119696
length1,0331,191
definitionB6Ng01-334B18.b B6Ng01-334B18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,935,205 - 10,935,610)(83,234,755 - 83,235,952)
sequence
gaattcatcacaaaaagaggaacttcatgatatatatgaaaggaagcaag
agctataaaaccaatcccattcatattcttttcttttttaattaggtatt
ttcctcgtttacattttcaatgctatcccaaaggtcccccatacccaccc
ccccaatcccctacccacccactgcccctttttggcactggtgttcccct
gtactggggcatataaagtttgcaagtccaatgggcctctctttgcagtg
atgaccgactaggccatcttttgatacatatgcagctaaagacaagagct
ccctggtactggttagttcatattgttgttccacctatagggttgcagtt
ccctttagctccttggttacagagacaacatttggagctgtgacgaaagg
atggaccatctagtgattgccatatgcagggatccatcccataatcagct
tccaaatgctgacaccattgcatacactagcaagattttgctgaaaggac
ccagatatagctctatcttgtgagactatgccagggcctagaaaacacag
aagtggatgaacagtcagctattggatgggtcacatggccccttatggag
gagctagagaaattacccattcatattctttctgagtagattggatccct
tgcctagtaggtgctttgaccatagtgaacactcacagtatatcatggat
ttgaagagcagtcattatcccttcatcactgaataatacatgaagttgcc
tccaaaggtgcctgaatttaggaattcagtaagacattcttaatgttctg
gtgatacaaatgatggaaaaatttactttccatttcatcctgtttataag
atcttatttaaaatcagttgattttcaccttccgctcgactcgagccccc
ggctaccttgccagcagagtcttgcccaacacccgcaagggcccacacgg
gactccccacgggatcctaagacctctggtgagtgaacacacttctgcca
ggagtctggttcgaacactagatatctgggtac

gaattcttacagtaaatagataagtacaatttacagctcgttgtgagtat
tctatttcttttcagtttcctatcttcttttcaggtgagttgattgacac
tgggaaaaggaacttgtcttatccttgtccttaaaagagacaagtccttt
tatgttcagctttctacatgcttagcattttacacaagttagaaagtatt
agttttacgtagtggtgtttgcaattatattgtccttgataatattttag
atgttattcaattatgatgcattttttcttttacatattagtgtgttgtt
tattatatttttgtttaaggaaattgattattgacttctggagataaatt
atttgcaataaaatcctgctaagaatattttaaaacttaaaagacttata
gagaatcatagtatattaagaatataagcatactttagtagaataagaac
aagatggtaaggcatagctttataatataaatgagaatagacataagtag
ctattgagaaacaaaagattttagttttcccatagactatctattatcta
ttatctaaaatttgtttgtccttgaatataaatcaaattgagtctagata
gaaaataaattttatgttaattttctcaactttaacactgtttttacatt
ctggaaatcaatggcaaattacctagtgaaactatagatatgaacataaa
aagatgcaaagcaaaatgttatttcatcaaaatcagttttgtcaaatatg
agtatcctatgtaaaatcatataaaacaagattatatactgaattaaaat
atgcaaaactctcctcaatgtctctcctaccttattttgttatttattct
tatacagatgaattattaataatgagctcatggatggaaataatacatat
atacacttacttcattactttccttaatataaatgtcatgcttttattcg
ctgtttttgtcatttttactctttagagcctatgcaaattaggtttatca
aattttacatagtcatagagtagtgatgatgaaataataggtatgtttat
ttattgctaatttgtcttcagacttttttgtaagtaatatttttttttgt
ttggtctataacagaatattttttaataccttgttttccattcatggatg
tggactcatggctaaacctctcttattagatagaactttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_10935205_10935610
seq2: B6Ng01-334B18.b_131_566 (reverse)

seq1  AAGATAG-----GTTCTGGGTCCTTTCAGCAAAATCTTGCTGGGGCCTAG  45
      |||||||       ||||||||||||||||||||||||||| | |  | |
seq2  AAGATAGAGCTATATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTAT-G  49

seq1  CAA-----ACA-CA----GAAGTGGAT---------GATCACAGTCA---  73
      |||      || ||    ||||  |||         |||| | | ||   
seq2  CAATGGTGTCAGCATTTGGAAGCTGATTATGGGATGGATCCCTG-CATAT  98

seq1  -GCTAT---TGGATGGGTCA---------CACGGCCCCTTATGGAGGAGC  110
       || ||   | |||||  ||         ||| || ||  |||  |   |
seq2  GGCAATCACTAGATGGTCCATCCTTTCGTCACAGCTCCAAATGTTGTCTC  148

seq1  TAGAGAAATTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGAA  160
      |        || ||||||||||||||||||||||||||||||||||||||
seq2  T-------GTAACCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGAA  191

seq1  CAACAATATGAACTAACCAGTACCCGGGAGCTCTTGTCTTTAGCTGCATA  210
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAACAATATGAACTAACCAGTACCAGGGAGCTCTTGTCTTTAGCTGCATA  241

seq1  TGTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATTG  260
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTATCAAAAGATGGCCTAGTCGGTCATCACTGCAAAGAGAGGCCCATTG  291

seq1  GACTTGCAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAG  310
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  GACTTGCAAACTTTATATGCCCCAGTACAGGGGAACACCAGTGCCAAAAA  341

seq1  GGGGCAGTGGGTGGGTAGGGGATTGGGGGGGGTGGGTATGGGGGACCTTT  360
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGGGCAGTGGGTGGGTAGGGGATT-GGGGGGGTGGGTATGGGGGACCTTT  390

seq1  GGGATAGCATTGAAAATGTAAATGAGGAAAATACCTAATAAAAAAA  406
      |||||||||||||||||||||| |||||||||||||||| ||||||
seq2  GGGATAGCATTGAAAATGTAAACGAGGAAAATACCTAATTAAAAAA  436


seq1: chr5_83234755_83235952
seq2: B6Ng01-334B18.g_68_1258

seq1  GAATTCTTACAGTAAATAGATAAGTACAATTTACAGCTCGTTGTGAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACAGTAAATAGATAAGTACAATTTACAGCTCGTTGTGAGTAT  50

seq1  TCTATTTCTTTTCAGTTTCCTATCTTCTTTTCAGGTGAGTTGATTGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCTTTTCAGTTTCCTATCTTCTTTTCAGGTGAGTTGATTGACAC  100

seq1  TGGGAAAAGGAACTTGTCTTATCCTTGTCCTTAAAAGAGACAAGTCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAAGGAACTTGTCTTATCCTTGTCCTTAAAAGAGACAAGTCCTTT  150

seq1  TATGTTCAGCTTTCTACATGCTTAGCATTTTACACAAGTTAGAAAGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCAGCTTTCTACATGCTTAGCATTTTACACAAGTTAGAAAGTATT  200

seq1  AGTTTTACGTAGTGGTGTTTGCAATTATATTGTCCTTGATAATATTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACGTAGTGGTGTTTGCAATTATATTGTCCTTGATAATATTTTAG  250

seq1  ATGTTATTCAATTATGATGCATTTTTTCTTTTACATATTAGTGTGTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTCAATTATGATGCATTTTTTCTTTTACATATTAGTGTGTTGTT  300

seq1  TATTATATTTTTGTTTAAGGAAATTGATTATTGACTTCTGGAGATAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATTTTTGTTTAAGGAAATTGATTATTGACTTCTGGAGATAAATT  350

seq1  ATTTGCAATAAAATCCTGCTAAGAATATTTTAAAACTTAAAAGACTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAATAAAATCCTGCTAAGAATATTTTAAAACTTAAAAGACTTATA  400

seq1  GAGAATCATAGTATATTAAGAATATAAGCATACTTTAGTAGAATAAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCATAGTATATTAAGAATATAAGCATACTTTAGTAGAATAAGAAC  450

seq1  AAGATGGTAAGGCATAGCTTTATAATATAAATGAGAATAGACATAAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGTAAGGCATAGCTTTATAATATAAATGAGAATAGACATAAGTAG  500

seq1  CTATTGAGAAACAAAAGATTTTAGTTTTCCCATAGACTATCTATTATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAGAAACAAAAGATTTTAGTTTTCCCATAGACTATCTATTATCTA  550

seq1  TTATCTAAAATTTGTTTGTCCTTGAATATAAATCAAATTGAGTCTAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAAAATTTGTTTGTCCTTGAATATAAATCAAATTGAGTCTAGATA  600

seq1  GAAAATAAATTTTATGTTAATTTTCTCAACTTTAACACTGTTTTTACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAATTTTATGTTAATTTTCTCAACTTTAACACTGTTTTTACATT  650

seq1  CTGGAAATCAATGGCAAATTACCTAGTGAAACTATAGATATGAACATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATCAATGGCAAATTACCTAGTGAAACTATAGATATGAACATAAA  700

seq1  AAGATGCAAAGCAAAATGTTATTTCATCAAAATCAGTTTTGTCAAATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCAAAGCAAAATGTTATTTCATCAAAATCAGTTTTGTCAAATATG  750

seq1  AGTATCCTATGTAAAATCATATAAAACAAGATTATATACTGAATTAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCTATGTAAAATCATATAAAACAAGATTATATACTGAATTAAAAT  800

seq1  ATGCAAAACTCTCCTCAATGTCTCTCCTACCTTATTTTGTTATTTATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAACTCTCCTCAATGTCTCTCCTACCTTATTTTGTTATTTATTCT  850

seq1  TATACAGATGAATTATTAATAATGAGCTCATGGATGGAAATAATACATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGATGAATTATTAATAATGAGCTCATGGATGGAAATAATACATAT  900

seq1  ATACACTTACTTCATTACTTTCCTTAATATAAATGTCATGCTTTTAATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATACACTTACTTCATTACTTTCCTTAATATAAATGTCATGCTTTT-ATTC  949

seq1  GCTGTTTTTGTCATTTTTACTCTTTAGAGCCTATGCAAATTAGGTTTATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTTGTCATTTTTACTCTTTAGAGCCTATGCAAATTAGGTTTATC  999

seq1  AAATTTTACATAGTCAATAGGAAGTAGTGATGATGAAATAATAGGTAATG  1050
      ||||||||||||||| ||||  |||||||||||||||||||||||| |||
seq2  AAATTTTACATAGTC-ATAG--AGTAGTGATGATGAAATAATAGGT-ATG  1045

seq1  TTTATTTATTGCTAATTTGTCTTCAGACTTTTTTGTAAAGTTAATATTTT  1100
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  TTTATTTATTGCTAATTTGTCTTCAGACTTTTTTGTAA--GTAATATTTT  1093

seq1  TTTGTTTTGGGTCTATTAACAGAATATTTTT--ATA-CTTG--TTCCAAT  1145
      ||| | || |||||| |||||||||||||||  ||| ||||  ||||| |
seq2  TTTTTGTTTGGTCTA-TAACAGAATATTTTTTAATACCTTGTTTTCCATT  1142

seq1  CATGGAATTGTTGGACTCAT-GCTAAAACT-TCTTAATTAAGATAGAAAA  1193
      ||||||  || ||||||||| |||||| || |||||  | |||||| || 
seq2  CATGGA--TG-TGGACTCATGGCTAAACCTCTCTTA--TTAGATAG-AAC  1186

seq1  TTTGT  1198
      |||||
seq2  TTTGT  1191


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