BAC Information

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BAC

Clone NameB6Ng01-336I07
Chromosome5 (Build37)
Map Location 17,946,636 - 17,947,772
singlet/doubletsinglet
Overlap genenone
Upstream geneSpeer4f, EG630927, Sema3c, Cd36, Gnat3, Gnai1, LOC100041818
Downstream geneLOC668167, 4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336I07.bB6Ng01-336I07.g
ACCGA121415GA121416
length1,1661,130
definitionB6Ng01-336I07.b B6Ng01-336I07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatgtagacactaccatatccggggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaac
atagaagtggatgctcacagtcggctattggatggatcacatggccccaa
tgaaggagctagagaaagtaccaaagaagctaaagggatctgcaaccctt
ataggtggaacaacattatgactaccagtaccccggagctcttgactcta
gctgcatatgcatcaaagatggctagtcggccatcactgaagagaggcca
atggacaccgcaaactttatatgccccagttacagggacgcccaggccat
taaaagtaattgctgg
gaattcttagagcatgtgagataaagctaaggggtgttcctagggataat
agaggagaaagtttattatagttaaaagggacagcttatccagaggcagg
gacttctagagagtccagagcgggcatgatcagaatgagctggaccatgt
gcgagaggaggaaaggaagggagagggaagagaaggaaccacatgcagca
ggcaggacaaaggtaaaaaacagggacgagtaaccaaaatattggaaata
gctagagattttctaaggcagagcctctgaggtaagggtagcccaggcag
agggcagagcatggtatgtaagccctttcctgtaacagataggtactgag
ggatgctgggagcatctggagactaggtctgctttgatatggtgcatagg
cactgcagctgtttggtctagggtttgaaccttaacagttcagcgatagg
aaaagtaaagcccatgtccaaagcaacagatctgaggatctgtacacatt
aagataagtctttaatatggcctgtttgatgaccaccaaaaaacagaagg
gaaaacaattcgcatgcatgcaggagctgaaaattcccctagatcatgaa
agatatgaggttttgggaaacctcaatgtatctttcagaatcaaatgacc
aaaccacacctaggcaaaagccaaaggtaaagaaaacattataacagccc
aactcataggagacagataagaaccagacaccttataacagcctaactca
caggagacagctaagaaccagcggtgacctaaatgccgctatctggggac
aaggtaaataatagcatctcaattacatatggtatgttaatagaaaaaaa
ggagtagactaatgattcacctgggcacatctcatggatatatccccaaa
atgttatctgagagaaagcacacctaaagatttataacctaggtggtgca
ccttatttaaaagactagaaaagacattgcaaatcatggatgatgggatg
aggtgggggtcatatggctacacggaccacataaagcgacagatgcttgg
cgaggtttaagagaaagaaccctcacgtgttctggataaggatgtaagca
aacctcccacaatgaaaccatattcacaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17946636_17947772
seq2: B6Ng01-336I07.g_63_1192 (reverse)

seq1  AATGTG-ATATGGTTTCATGGTGGGGAGGTTGCTTTACATTCCTATCCAG  49
      | |||| |||||||||||| || ||||||||   |||||| | |||||||
seq2  ATTGTGAATATGGTTTCATTGT-GGGAGGTTTGCTTACATCCTTATCCAG  49

seq1  AACACGTGAGGGTTCTTTCTCTTAACCCTCG-CAAGCATCTGTCGCTTTA  98
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  AACACGTGAGGGTTCTTTCTCTTAAACCTCGCCAAGCATCTGTCGCTTTA  99

seq1  TGT-GTCCGTGGTAGCCATTATGACCCCCACCTCATTCCCAATCATCCAT  147
      ||| |||||| ||||||| |||||||||||||||||  || |||||||| 
seq2  TGTGGTCCGT-GTAGCCA-TATGACCCCCACCTCAT--CCCATCATCCA-  144

seq1  TGATTTGCAATTGTCTTTTTCTAGTCTTTTTAAATAAGGTGCACCACCTA  197
      |||||||||| |||| |||||||||| |||||||||||||||||||||||
seq2  TGATTTGCAA-TGTC-TTTTCTAGTC-TTTTAAATAAGGTGCACCACCTA  191

seq1  GGTTATAAATCTTTAGGTGTGCTTTCTCTCAGATAACATTTTGGGGATAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATAAATCTTTAGGTGTGCTTTCTCTCAGATAACATTTTGGGGATAT  241

seq1  ATCCATGAGATGTGCCCAGGTGAATCATTAGTCTACTCCTTTTTTTCTAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGAGATGTGCCCAGGTGAATCATTAGTCTACTCCTTTTTTTCTAT  291

seq1  TAACATACCATATGTAATTGAGATGCTATTATTTACCTTGTCCCCAGATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATACCATATGTAATTGAGATGCTATTATTTACCTTGTCCCCAGATA  341

seq1  GCGGCATTTAGGTCACCGCTGGTTCTTAGCTGTCTCCTGTGAGTTAGGCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCATTTAGGTCACCGCTGGTTCTTAGCTGTCTCCTGTGAGTTAGGCT  391

seq1  GTTATAAGGTTTTCTGGTTCTTATCTGTCTCCTATGAGTTGGGCTGTTAT  447
      ||||||||| | ||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAGG-TGTCTGGTTCTTATCTGTCTCCTATGAGTTGGGCTGTTAT  440

seq1  AATGTTTTCTTTACCTTTGGCTTTTGCCTAGGTGTGGTTTGGTCATTTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTCTTTACCTTTGGCTTTTGCCTAGGTGTGGTTTGGTCATTTGA  490

seq1  TTCTGAAAGATACATTGAGGTTTCCCAAAACCTCATATCTTTCATGATCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAGATACATTGAGGTTTCCCAAAACCTCATATCTTTCATGATCT  540

seq1  AGGGGAATTTTCAGCTCCTGCATGCATGCGAATTGTTTTCCCTTCTGTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATTTTCAGCTCCTGCATGCATGCGAATTGTTTTCCCTTCTGTTT  590

seq1  TTTGGTGGTCATCAAACAGGCCATATTAAAGACTTATCTTAATGTGTACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGGTCATCAAACAGGCCATATTAAAGACTTATCTTAATGTGTACA  640

seq1  GATCCTCAGATCTGTTGCTTTGGACATGGGCTTTACTTTTCCTATCGCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCAGATCTGTTGCTTTGGACATGGGCTTTACTTTTCCTATCGCTG  690

seq1  AACTGTTAAGGTTCAAACCCTAGACCAAACAGCTGCAGTGCCTATGCACC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTAAGGTTCAAACCCTAGACCAAACAGCTGCAGTGCCTATGCACC  740

seq1  ATATCAAAGCAGACCTAGTCTCCAGATGCTCCCAGCATCCCTCAGTACCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAAGCAGACCTAGTCTCCAGATGCTCCCAGCATCCCTCAGTACCT  790

seq1  ATCTGTTACAGGAAAGGGCTTACATACCATGCTCTGCCCTCTGCCTGGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTACAGGAAAGGGCTTACATACCATGCTCTGCCCTCTGCCTGGGC  840

seq1  TACCCTTACCTCAGAGGCTCTGCCTTAGAAAATCTCTAGCTATTTCCAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTACCTCAGAGGCTCTGCCTTAGAAAATCTCTAGCTATTTCCAAT  890

seq1  ATTTTGGTTACTCGTCCCTGTTTTTTACCTTTGTCCTGCCTGCTGCATGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTTACTCGTCCCTGTTTTTTACCTTTGTCCTGCCTGCTGCATGT  940

seq1  GGTTCCTTCTCTTCCCTCTCCCTTCCTTTCCTCCTCTCGCACATGGTCCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTTCTCTTCCCTCTCCCTTCCTTTCCTCCTCTCGCACATGGTCCA  990

seq1  GCTCATTCTGATCATGCCCGCTCTGGACTCTCTAGAAGTCCCTGCCTCTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTCTGATCATGCCCGCTCTGGACTCTCTAGAAGTCCCTGCCTCTG  1040

seq1  GATAAGCTGTCCCTTTTAACTATAATAAACTTTCTCCTCTATTATCCCTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGCTGTCCCTTTTAACTATAATAAACTTTCTCCTCTATTATCCCTA  1090

seq1  GGAACACCCCTTAGCTTTATCTCACATGCTCTAAGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACCCCTTAGCTTTATCTCACATGCTCTAAGAATTC  1130