BAC Information

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BAC

Clone NameB6Ng01-336I13
Chromosome5 (Build37)
Map Location 15,112,600 - 15,129,924
singlet/doubletdoublet
Overlap geneSpeer4d
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336I13.bB6Ng01-336I13.g
ACCGA121427GA121428
length1,188785
definitionB6Ng01-336I13.b B6Ng01-336I13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,128,763 - 15,129,924)(15,112,600 - 15,113,411)
sequence
gaattcatgacaccatggatgcagtatggcagtgattacatcatcaagtg
tgtgtccatggggtcagtgacattatccacacacaaaagatcatcattgc
cttgtatagcccctaggtggctatggctttactatgtagccctggctgcc
tggaacttacagagatccatctctggcttgaattctaggtctgcagcagg
ggacagaacacctgaataaggaagatggtctcaagagtcactacttgcaa
atcaatttttattcataagaaatagaatttttaaaaaataggttttaaaa
gttcaattaatatagagataaaggcaaaaacaaacaatgaaacacaagaa
caagaacatataacttctaaataacataacaataactcaaagaacaaaaa
taaaaacttaaaccaaaactctaaaggaaaattattgttcagctgctttt
gctttctgcacttttagcagcacagccctccagcctgctgctcctcttgg
acactaggtatcagtgcagccgcctcagttctctgccaagagacgttgtc
tgaagagaaaagggaacaacgccctgaatcagccatggcttcctagtaaa
ggcctattcaccctaagaaaatgaattatatggaagaagattcatccgag
gaagattgtgggtgctggagatggtgctcagcaggggcctcctggcctgg
caactcattctgcaggatgctgtcttcttcagctgtggccaatcccagct
ctcttgcagtttctgagacctgggagaggaaggcagttactaagacacag
gagtggaggagacaggcatggcagctgtgaggctactgcctcctaccacc
tcaactgtacttgacagtcaacattaatattttaactgaagttattgatg
ttaaatctaaagacagggcaaaatattcaacaacagtcacaaaacatgga
ctgacaaagatcaactcagcttctatcagttccaaccaaaacatggcaaa
ggaagagagctcagtggattacaggaagaaaggagaagggcacaggacac
cagatcaatgataatgagagcactcatttggacatttgtactggctctta
tccctccaaggtgcagacaacatgggatgtcataagaactctgctgtctc
ctgtctagaccagaatctccactcaaacctcgctgcat
gaattcctcttctcaggtacaactgggtctttgtcaagttgataaaatgc
aagaaacatatcgtgcaaatgaaacagaagcagcattgaaagtctgagta
gcctgtgggcatccctgcacatgtgcctgtgggtagctgacagatcatct
ggtttaaaagcaaggctggtagtctagtcaatcatggtcgctgttctagt
gctaaaccagattctggagaaagctctattgttgttaagacttgagagga
gcttggtggctgattatgggatggatccccgggtggggtagtctctggat
ggtccatcctttcctcttaactttgtctccgtaactccttccatgggaat
tttgttccctattctgatactactgcatatgccagcaagattttgctgaa
aggaccttgatatagctgtcttgtgaggctatgccagtacctggcaaaca
gaagtggatgctcacagtcatttataggatggagcacagggcctccaatg
gagaagctagagaaagcacccaaggagctgaagggatctgcaaccctata
ggtggaacaacaatatgaactaaccagtacccccagagcttgtgtctcta
gctgcatatgtagcagaagatggcctcgtcagccatcattggaaagagag
gcccctaggtcttgcaaactttatatgccccagtacagggccaagaaatg
ggagtgggtgggtggggggagcagggcgaggggagggtatagagaacttt
agcgatagcatttgaaatgtaaataaaaatattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15128763_15129924
seq2: B6Ng01-336I13.b_48_1234 (reverse)

seq1  ATGCA--GAGGTTTGAGT-GAGATCTGGGTCCTTAGACAGGAGACAGGCA  47
      |||||  ||||||||||| |||||   ||||  ||||||||||||| |||
seq2  ATGCAGCGAGGTTTGAGTGGAGATTCTGGTC--TAGACAGGAGACA-GCA  47

seq1  GAGGTCTTATGGCATCCCATG-TGTCTGCACCTTGGAGGGATTAGAGCCA  96
      ||| ||||||| ||||||||| |||||||||||||||||||| |||||| 
seq2  GAGTTCTTATGACATCCCATGTTGTCTGCACCTTGGAGGGATAAGAGCC-  96

seq1  AGTACAAATGT-CAAATGAGTGCTTCTCATTATCATTGATCTGGTGTCCT  145
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  AGTACAAATGTCCAAATGAGTGC-TCTCATTATCATTGATCTGGTGTCCT  145

seq1  GTGCCCTTCTCCTTTCTTCCTGTAATCCACTGAGGTCTCTTCCTTTGCCA  195
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTGCCCTTCTCCTTTCTTCCTGTAATCCACTGAGCTCTCTTCCTTTGCCA  195

seq1  TGTTTTTGGTTGGAACTGATAGAATCCTGAGTTGATCTTTGTCAGTCCAT  245
      || |||||||||||||||||||||  ||||||||||||||||||||||||
seq2  TG-TTTTGGTTGGAACTGATAGAA-GCTGAGTTGATCTTTGTCAGTCCAT  243

seq1  GTTTTTGTGACTGTTGTTGAATATTTTGCCCTGTCTTTAGATTTAACATC  295
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TTTTGTGACTGTTGTTGAATATTTTGCCCTGTCTTTAGATTTAACATC  292

seq1  AATAACTTCAGTTAAAATATTAATGTTGACTGTCAAGTACAGTTGAGGTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTCAGTTAAAATATTAATGTTGACTGTCAAGTACAGTTGAGGTG  342

seq1  GTAGGAGGCAGTAGCCTCACAGCTGCCATGCCTGTCTCCTCCACTCCTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGGCAGTAGCCTCACAGCTGCCATGCCTGTCTCCTCCACTCCTGT  392

seq1  GTCTTAGTAACTGCCTTCCTCTCCCAGGTCTCAGAAACTGCAAGAGAGCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGTAACTGCCTTCCTCTCCCAGGTCTCAGAAACTGCAAGAGAGCT  442

seq1  GGGATTGGCCACAGCTGAAGAAGACAGCATCCTGCAGAATGAGTTGCCAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGGCCACAGCTGAAGAAGACAGCATCCTGCAGAATGAGTTGCCAG  492

seq1  GCCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCTACAATCATCCTCG  545
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  GCCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCCACAATCTTCCTCG  542

seq1  GATGAATCTTCTTCCATATAATTCATTTTCTTAGGGTGAATAGGCCTTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATCTTCTTCCATATAATTCATTTTCTTAGGGTGAATAGGCCTTTA  592

seq1  CTAGGAAGCCATGGCTGATTCAGGGCATTGTTCCCTTTTCTCTTCAGACA  645
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTAGGAAGCCATGGCTGATTCAGGGCGTTGTTCCCTTTTCTCTTCAGACA  642

seq1  ACAACTCTTGGCAGAGTACTGAGGTGACTGCACTGCCACCAAGTGTCCAA  695
      ||  |||||||||||| ||||||| | ||||||||  ||| |||||||||
seq2  ACGTCTCTTGGCAGAGAACTGAGGCGGCTGCACTGATACCTAGTGTCCAA  692

seq1  GAGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAGTGCAGAAA------  739
      ||||||||||||||||||||||||||||||||||||||||||||      
seq2  GAGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAGTGCAGAAAGCAAAA  742

seq1  -AAGCTGAACAATAATTTTC-----------TG--------TTTGGTTTT  769
        ||||||||||||||||||           ||        |||  ||||
seq2  GCAGCTGAACAATAATTTTCCTTTAGAGTTTTGGTTTAAGTTTTTATTTT  792

seq1  TGTTCTTTGAG-TGTTGATATGTTATTTAGAAGTTATATGTTCTTGTTCT  818
      ||||||||||| | ||| ||||||||||||||||||||||||||||||||
seq2  TGTTCTTTGAGTTATTGTTATGTTATTTAGAAGTTATATGTTCTTGTTCT  842

seq1  TGTATTTCATTGTTTGTTTTTGCCTTCAACTCTATATTAATTGAACTTTT  868
      ||| |||||||||||||||||||||| | |||||||||||||||||||||
seq2  TGTGTTTCATTGTTTGTTTTTGCCTTTATCTCTATATTAATTGAACTTTT  892

seq1  AAAACC--TTTTTTTAAAATTTTATTTCTTATGAATAAAAATTGATTTGC  916
      ||||||  |||||| |||||| ||||||||||||||||||||||||||||
seq2  AAAACCTATTTTTTAAAAATTCTATTTCTTATGAATAAAAATTGATTTGC  942

seq1  AAGTAGTGACTCTTGAGACCATCTTCCTTATTCAGGTGTTCTGTCCCCTG  966
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTGACTCTTGAGACCATCTTCCTTATTCAGGTGTTCTGTCCCCTG  992

seq1  CTGCAGACCTAGAATTCACAGCCAGAGACGGATCTCTGTAAGTTCCAGGC  1016
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  CTGCAGACCTAGAATTCA-AGCCAGAGATGGATCTCTGTAAGTTCCAGGC  1041

seq1  AGCCAGGGCTACATAGTAAAGCCATAGCCACCTAGGGAGTATACAAGGCA  1066
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  AGCCAGGGCTACATAGTAAAGCCATAGCCACCTAGGGGCTATACAAGGCA  1091

seq1  ATGATGATCTTTTGTGTGTGGATAATGTCACTTACCCCATGGACACACAC  1116
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATGATGATCTTTTGTGTGTGGATAATGTCACTGACCCCATGGACACACAC  1141

seq1  TTGATGATGTAATCACTGCCATACTGCATCCATGGTGTCATGAATT  1162
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGATGTAATCACTGCCATACTGCATCCATGGTGTCATGAATT  1187

seq1: chr5_15112600_15113411
seq2: B6Ng01-336I13.g_1_811

seq1  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  50
                                                        
seq2  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  50

seq1  NNNNNNNNNNNNNNNNNGAATTCCTCTTCTCAGGTACAACTGGGTCTTTG  100
                       |||||||||||||||||||||||||||||||||
seq2  NNNNNNNNNNNNNNNNNGAATTCCTCTTCTCAGGTACAACTGGGTCTTTG  100

seq1  TCAAGTTGATAAAATGCAAGAAACATATCGTGCAAATGAAACGGAAGCAG  150
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCAAGTTGATAAAATGCAAGAAACATATCGTGCAAATGAAACAGAAGCAG  150

seq1  CATTGAAAGTCTGAGTAGCCGGTGGGCATCCCTGCACATGTGCCTGTGGG  200
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATTGAAAGTCTGAGTAGCCTGTGGGCATCCCTGCACATGTGCCTGTGGG  200

seq1  TAGCTGACAGATCAGCTGGTTTAAAAGCAAGGCTGGTGGTCTAGTCAATC  250
      |||||||||||||| |||||||||||||||||||||| ||||||||||||
seq2  TAGCTGACAGATCATCTGGTTTAAAAGCAAGGCTGGTAGTCTAGTCAATC  250

seq1  ATGGTCGCTGTTCTAGTGCTAAACCAGATTCTGGAGAAAGCTCTATTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCGCTGTTCTAGTGCTAAACCAGATTCTGGAGAAAGCTCTATTGTT  300

seq1  GTTAAGACTTGAGAGGAGCTTGGTGGCTGATTATGGGATGGATCATCGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  GTTAAGACTTGAGAGGAGCTTGGTGGCTGATTATGGGATGGATCCCCGGG  350

seq1  TGGGGTAGTCTCTGGATGGTCCATCCTTTCTTCTTAGCTTTGTCTCCGTA  400
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  TGGGGTAGTCTCTGGATGGTCCATCCTTTCCTCTTAACTTTGTCTCCGTA  400

seq1  ACTCCTTCCATGGCTTTTTTGTTCCCTATTCTGACACTACTGCATATGCC  450
      |||||||||||||   |||||||||||||||||| |||||||||||||||
seq2  ACTCCTTCCATGGGAATTTTGTTCCCTATTCTGATACTACTGCATATGCC  450

seq1  AGCAAGATTTTGCTGAAAGGACCTTGATATAGCTGTCTTGTGAGGCTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATTTTGCTGAAAGGACCTTGATATAGCTGTCTTGTGAGGCTATG  500

seq1  CCAGTGCCTGGCAAACACAGAAGTGGATGCTCACAGTCATCTATAGGATG  550
      ||||| ||||||||  |||||||||||||||||||||||| |||||||||
seq2  CCAGTACCTGGCAA--ACAGAAGTGGATGCTCACAGTCATTTATAGGATG  548

seq1  GAGCACAGGGCCTCCAATGGAGAAGCTAGAGAAAGCACCCAAGGAGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGGGCCTCCAATGGAGAAGCTAGAGAAAGCACCCAAGGAGCTGA  598

seq1  AGGGATCTGCAACCCTATAAGTGGAACAACAATATGAACTAACCAGTACC  650
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGGATCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACC  648

seq1  CCCAGAGCTTGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCCAGAGCTTGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTCGTCA  698

seq1  GCCAGCATTGGGAAGAGAGGCCCCTAGGTCTTGCAAACTTTATATGCCGC  750
      |||| |||||| |||||||||||||||||||||||||||||||||||| |
seq2  GCCATCATTGGAAAGAGAGGCCCCTAGGTCTTGCAAACTTTATATGCCCC  748

seq1  AGTACAGGGCCAAGAAATAGGAGTGGGTGGGT-GGGGGAGCAGGGCGAGG  799
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  AGTACAGGGCCAAGAAATGGGAGTGGGTGGGTGGGGGGAGCAGGGCGAGG  798

seq1  GGAGGGTATAGAG  812
      |||||||||||||
seq2  GGAGGGTATAGAG  811