BAC Information

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BAC

Clone NameB6Ng01-336I24
Chromosome5 (Build37)
Map Location 59,920,051 - 59,976,673
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336I24.bB6Ng01-336I24.g
ACCGA121449GA121450
length1,169543
definitionB6Ng01-336I24.b B6Ng01-336I24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,975,498 - 59,976,673)(59,920,051 - 59,920,599)
sequence
gaattctctatttcctctcttatagctatgtgtcattgaataaactcttg
tttaaagcagatggccatgcagaaagagatatccagaaaaaaattcactt
ttcataacacagcccaaagattactattatcctacttcctgtttatatct
gagttaactatgagtcatccattaaatgacttcactgatttcttcaattt
atattataatagattttgattaaaataaattttataaatattaattattg
agtcctgtgggaatacaaatgataggaatgtaaaaaatttaaaaaaaaag
ttacttccaaagagaaaattatgggtttgaaaaatagctgcttatcttaa
ttactcatttgttattttatagcttctacaaataaaatgaagttaacaat
atcacacaaaatgctttatatgtatttttgcagaaaatcttccattttat
gatagtattgaatgatttttcaatacaaaattaacaactacataaatttt
gtgattaataatttgccaaattttctatttagttaattatcttaaaaaat
attggtgcattacaatgaatttaatagggatttttttcactaaagtatta
ttaacaatttttttccttctgaacagcaaaatattcctaaccatatccat
agcacttcattttaattatttaagtttgagggtattaataaggacctatt
accagtcacaaaatcacatttaaacttttattagtggcttgaaatgattt
actaacaattctcatatatgtattatatatatgtgatattttgtttattt
ctcagatagccaaagaccatatgttttaagattcatgaaggagaaagagt
gtctttctgtaaaccaagtgtttgtctatgtgactgtctgtaaaaagact
gttaggcatcacagagagtcttaataaattttccctcagaacagaaaccc
ttttaatccttgggctttgtaaaacattttttgcacagctagagagtgat
taaattcacaaatggacttaatttcacatttctaagtgacatcaaataga
aaatattatgggcatcagtgtgatattttctaatattgaatccattattt
tatttggcagatcatatttatagagcgaatgaacatcttggtgactgggt
tatttggaaatcatggcgt

aacatggcgtagattcagagctgagttttttctataaaaatttcagtata
gtgtgcaaagatatatatctgagcaaacagagagacccatggctataagt
aaacagaattttgtagatgaaaacattgactacagtttatatccaattat
catctcatatgaaataaaagcttagacagtacagtggtctttcttaaaag
tccagatggagaaatgaggcaaagattctgcactatgaaagatgattaaa
caaatacagattatcgctgatgtcaatttcctataaatactgattttcat
tgtaaagtatttatatttttcattaatttatttgcttattcactttagat
cccagctccctccctcctctactcccagtcatacctacattatgaggtat
gtaccaacttagcagagaagtagaagaccctaccttgggatatctagtcc
cagcaggaataagcacattgtctctcgctgaggcaaagcaaacagtaaag
ataggggaagaggatccagtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59975498_59976673
seq2: B6Ng01-336I24.b_46_1214 (reverse)

seq1  ACGCCATGATATTTCAAAT-ACACAGTCA-CAAGATGGTCATTCGGCTCT  48
      |||||||||| || ||||| || |||||| ||||||| |||||| |||||
seq2  ACGCCATGAT-TTCCAAATAACCCAGTCACCAAGATGTTCATTC-GCTCT  48

seq1  TAATAAATATGGATCTG-CAAATAAAATAATGGA-TCAATATTTAGAAAA  96
        |||||||| |||||| |||||||||||||||| |||||| ||||||||
seq2  --ATAAATAT-GATCTGCCAAATAAAATAATGGATTCAATA-TTAGAAAA  94

seq1  TATCACAACTGGATGCCCATAATATTTTCTATTTGATGGTCACTTAGAAA  146
      |||||| ||| |||||||||||||||||||||||||| ||||||||||||
seq2  TATCAC-ACT-GATGCCCATAATATTTTCTATTTGAT-GTCACTTAGAAA  141

seq1  TTGTGAAATTAAGTCCATTTGTGAATTTAATCACTCTCTAGCTGTGCAAA  196
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGTGAAATTAAGTCCATTTGTGAATTTAATCACTCTCTAGCTGTGCAAA  190

seq1  AAATGTTTTTACAAAGCCCAAGGATTAAAAGGGTTTCTGTTCTGAGGGAA  246
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATG-TTTTACAAAGCCCAAGGATTAAAAGGGTTTCTGTTCTGAGGGAA  239

seq1  AATTTATTAAGACTCTCTGTGATGCCTAACAGTCTTTTTACAGACAGTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTAAGACTCTCTGTGATGCCTAACAGTCTTTTTACAGACAGTCA  289

seq1  CATAGACAAACACTTGGTTTACAGAAAGACACTCTTTCTCCTTCATGAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACAAACACTTGGTTTACAGAAAGACACTCTTTCTCCTTCATGAAT  339

seq1  CTTAAAACATATGGTCTTTGGCTATCTGAGAAATAAACAAAATATCACAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACATATGGTCTTTGGCTATCTGAGAAATAAACAAAATATCACAT  389

seq1  ATATATAATACATATATGAGAATTGTTAGTAAATCATTTCAAGCCACTAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATACATATATGAGAATTGTTAGTAAATCATTTCAAGCCACTAA  439

seq1  TAAAAGTTTAAATGTGATTTTGTGACTGGTAATAGGTCCTTATTAATACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTTAAATGTGATTTTGTGACTGGTAATAGGTCCTTATTAATACC  489

seq1  CTCAAACTTAAATAATTAAAATGAAGTGCTATGGATATGGTTAGGAATAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTTAAATAATTAAAATGAAGTGCTATGGATATGGTTAGGAATAT  539

seq1  TTTGCTGTTCAGAAGGAAAAAAATTGTTAATAATACTTTAGTGAAAAAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTTCAGAAGGAAAAAAATTGTTAATAATACTTTAGTGAAAAAAA  589

seq1  TCCCTATTAAATTCATTGTAATGCACCAATATTTTTTAAGATAATTAACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATTAAATTCATTGTAATGCACCAATATTTTTTAAGATAATTAACT  639

seq1  AAATAGAAAATTTGGCAAATTATTAATCACAAAATTTATGTAGTTGTTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAAATTTGGCAAATTATTAATCACAAAATTTATGTAGTTGTTAA  689

seq1  TTTTGTATTGAAAAATCATTCAATACTATCATAAAATGGAAGATTTTCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATTGAAAAATCATTCAATACTATCATAAAATGGAAGATTTTCTG  739

seq1  CAAAAATACATATAAAGCATTTTGTGTGATATTGTTAACTTCATTTTATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATACATATAAAGCATTTTGTGTGATATTGTTAACTTCATTTTATT  789

seq1  TGTAGAAGCTATAAAATAACAAATGAGTAATTAAGATAAGCAGCTATTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGCTATAAAATAACAAATGAGTAATTAAGATAAGCAGCTATTTT  839

seq1  TCAAACCCATAATTTTCTCTTTGGAAGTAACTTTTTTTTTAAATTTTTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCCATAATTTTCTCTTTGGAAGTAACTTTTTTTTTAAATTTTTTA  889

seq1  CATTCCTATCATTTGTATTCCCACAGGACTCAATAATTAATATTTATAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTATCATTTGTATTCCCACAGGACTCAATAATTAATATTTATAAA  939

seq1  ATTTATTTTAATCAAAATCTATTATAATATAAATTGAAGAAATCAGTGAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTAATCAAAATCTATTATAATATAAATTGAAGAAATCAGTGAA  989

seq1  GTCATTTAATGGATGACTCATAGTTAACTCAGATATAAACAGGAAGTAGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTAATGGATGACTCATAGTTAACTCAGATATAAACAGGAAGTAGG  1039

seq1  ATAATAGTAATCTTTGGGCTGTGTTATGAAAAGTGAATTTTTTTCTGGAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGTAATCTTTGGGCTGTGTTATGAAAAGTGAATTTTTTTCTGGAT  1089

seq1  ATCTCTTTCTGCATGGCCATCTGCTTTAAACAAGAGTTTATTCAATGACA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTCTGCATGGCCATCTGCTTTAAACAAGAGTTTATTCAATGACA  1139

seq1  CATAGCTATAAGAGAGGAAATAGAGAATTC  1176
      ||||||||||||||||||||||||||||||
seq2  CATAGCTATAAGAGAGGAAATAGAGAATTC  1169


seq1: chr5_59920051_59920599
seq2: B6Ng01-336I24.g_63_611

seq1  GAATTCAACATGGCGTAGATTCAGAGCTGAGTTTTTTCTATAAAAATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATGGCGTAGATTCAGAGCTGAGTTTTTTCTATAAAAATTTC  50

seq1  AGTATAGTGTGCAAAGATATATATCTGAGCAAACAGAGAGACCCATGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGTGTGCAAAGATATATATCTGAGCAAACAGAGAGACCCATGGCT  100

seq1  ATAAGTAAACAGAATTTTGTAGATGAAAACATTGACTACAGTTTATATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAAACAGAATTTTGTAGATGAAAACATTGACTACAGTTTATATCC  150

seq1  AATTATCATCTCATATGAAATAAAAGCTTAGACAGTACAGTGGTCTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCATCTCATATGAAATAAAAGCTTAGACAGTACAGTGGTCTTTCT  200

seq1  TAAAAGTCCAGATGGAGAAATGAGGCAAAGATTCTGCACTATGAAAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTCCAGATGGAGAAATGAGGCAAAGATTCTGCACTATGAAAGATG  250

seq1  ATTAAACAAATACAGATTATCGCTGATGTCAATTTCCTATAAATACTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACAAATACAGATTATCGCTGATGTCAATTTCCTATAAATACTGAT  300

seq1  TTTCATTGTAAAGTATTTATATTTTTCATTAATTTATTTGCTTATTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGTAAAGTATTTATATTTTTCATTAATTTATTTGCTTATTCACT  350

seq1  TTAGATCCCAGCTCCCTCCCTCCTCTACTCCCAGTCATACCTACATTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCCCAGCTCCCTCCCTCCTCTACTCCCAGTCATACCTACATTATG  400

seq1  AGGTATGTACCAACTTAGCAGAGAAGTAGAAGACCCTACCTTGGGATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGTACCAACTTAGCAGAGAAGTAGAAGACCCTACCTTGGGATATC  450

seq1  TAGTCCCAGCAGGAATAAGCACATTGTCTCTCGCTGAGGCAAAGCAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCAGCAGGAATAAGCACATTGTCTCTCGCTGAGGCAAAGCAAACA  500

seq1  GTAAAGATAGGGGAAGAGGATCCAGTGTGTGTGTGTGTGTGTGTGTGTG  549
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGATAGGGGAAGAGGATCCAGTGTGTGTGTGTGTGTGTGTGTGTG  549


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