BAC Information

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BAC

Clone NameB6Ng01-338L20
Chromosome5 (Build37)
Map Location 57,035,366 - 57,127,078
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338L20.bB6Ng01-338L20.g
ACCGA122939GA122940
length907964
definitionB6Ng01-338L20.b B6Ng01-338L20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,035,366 - 57,036,273)(57,126,100 - 57,127,078)
sequence
gaattccaggttgagaggctctgatgccctactctcacctgttcagtgca
ttcacaagatgcaggaaacatatataaagagaaaaacactcatattcata
aaaacaggtagaggcaaccagtgattgtaaaattgtggagagtcagcatg
gaataagctttctgataaattattcacactcaagtgatcactcttaaact
catatatatactaacaacattgaatggtcttaatatgtatgcacatattt
caagctatataattttatattaattacagatttatatatatattataatg
agtataatacattaagtgtatttgagttcagaagcactcactgaatgagt
ttggatggggagaggaaaagatagaataatgtaaaatactgaactcatat
atgaaatcctaaaataaaagaaatgcttaattaaaatgatttattgttat
ttttaattatgtgcatgtgtttctgtgtatcatctgtgtttggggtattg
cagaatatagacgatgaaaacagataatctgctgcttcagctacctagat
tccatgacctcataaaccataggaatttatttgggtttacaggattagat
atgatttcattatcattgagagaaaattaagtccaagtaaacagttttta
accccaacataagtggcattattgcaaccttgattatttgttgatgttgg
tgatttctgtgctttgtagaatttctatctgggtggtaatattaattgct
tggtctcctcctggtagcttgcatagaattttaaaactgtgaattatttc
cagagagttgcctttcaattcagttcaggatcagttcttctaggacattt
ctcctaatggtgtataaatatttcagcaataaaaacttgttttagagtgg
gggaggt

gaattccataaaaaaatcaaattgcaatttttaaatagatggacaagaaa
aatgaaacaaagagctcagtggaaagcttataaaatggattagttcaact
aaaaggcagagtatgaggtcttaaagactagtgagcttaattagaatatt
cagagaacaaagaaaagaacagaacacctaaaacttttcacagaagcact
gaggcacataaaaagttaggcccatcagtataacagatttctcagtaaaa
actcatcaaagccaaagaggtcactgagtgaagtattttaagctcttaaa
ggtgagaactaacaccacagcttaataagatcactatatttctagatcat
caaggctatcactaataattgaaggaaaaaggaaaagcttttcaaatgaa
tataaactaaagactctgtgattaccaattgaaaattacaatacataatt
gaagggactctagtaacaaaataaaggtaaaaacaaccgatgttaagcta
aaaaaaaaaaaaaaaaacaaacaacaacaaaaaacgacgagacaaacttt
aattgtttgtttcatacagtgttttgaaaatctgtgcattatttctagac
tgtaaatgattcttgttaaagttttaacatctatatgaagctactagcaa
ttatttcttttctttttgggggatatagattttattgttttcagtattac
attttaactacattataaggtttgttcaccccccagtcattcatcaaatg
aggagggttatattcaaggccagaagacttgtagcacaaggatataaatt
tataactccatataaatactaagtttagaacagaggttacttaaatattt
ctgcctatgccaagatgattatgatccaactatgatttcaaatttagaag
ccaacttcacttatttcttggagtataccatagacaacacgttaaatacc
tgaatgattgtaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57035366_57036273
seq2: B6Ng01-338L20.b_48_954

seq1  GAATTCCAGGTTGAGAGGCTCTGATGCCCTACTCTCACCTGTTCAGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTGAGAGGCTCTGATGCCCTACTCTCACCTGTTCAGTGCA  50

seq1  TTCACAAGATGCAGGAAACATATATAAAGAGAAAAACACTCATATTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAGATGCAGGAAACATATATAAAGAGAAAAACACTCATATTCATA  100

seq1  AAAACAGGTAGAGGCAACCAGTGATTGTAAAATTGTGGAGAGTCAGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGTAGAGGCAACCAGTGATTGTAAAATTGTGGAGAGTCAGCATG  150

seq1  GAATAAGCTTTCTGATAAATTATTCACACTCAAGTGATCACTCTTAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGCTTTCTGATAAATTATTCACACTCAAGTGATCACTCTTAAACT  200

seq1  CATATATATACTAACAACATTGAATGGTCTTAATATGTATGCACATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATACTAACAACATTGAATGGTCTTAATATGTATGCACATATTT  250

seq1  CAAGCTATATAATTTTATATTAATTACAGATTTATATATATATTATAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTATATAATTTTATATTAATTACAGATTTATATATATATTATAATG  300

seq1  AGTATAATACATTAAGTGTATTTGAGTTCAGAAGCACTCACTGAATGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAATACATTAAGTGTATTTGAGTTCAGAAGCACTCACTGAATGAGT  350

seq1  TTGGATGGGGAGAGGAAAAGATAGAATAATGTAAAATACTGAACTCATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGGGGAGAGGAAAAGATAGAATAATGTAAAATACTGAACTCATAT  400

seq1  ATGAAATCCTAAAATAAAAGAAATGCTTAATTAAAATGATTTATTGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCCTAAAATAAAAGAAATGCTTAATTAAAATGATTTATTGTTAT  450

seq1  TTTTAATTATGTGCATGTGTTTCTGTGTATCATCTGTGTTTGGGGTATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTATGTGCATGTGTTTCTGTGTATCATCTGTGTTTGGGGTATTG  500

seq1  CAGAATATAGACGATGAAAACAGATAATCTGCTGCTTCAGCTACCTAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATAGACGATGAAAACAGATAATCTGCTGCTTCAGCTACCTAGAT  550

seq1  TCCATGACCTCATAAACCATAGGAATTTATTTGGGTTTACAGGATTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGACCTCATAAACCATAGGAATTTATTTGGGTTTACAGGATTAGAT  600

seq1  ATGATTTCATTATCATTGAGAGAAAATTAAGTCCAAGTAAACAGTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTCATTATCATTGAGAGAAAATTAAGTCCAAGTAAACAGTTTTTA  650

seq1  ACCCCAACATAAGTGGCATTATTGCAACCTTGATTATTTGTTGATGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAACATAAGTGGCATTATTGCAACCTTGATTATTTGTTGATGTTGG  700

seq1  TGATTTCTGTGCTTTGTAGAATTTCTATCTGGGTGGTAATATTAATTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTGTGCTTTGTAGAATTTCTATCTGGGTGGTAATATTAATTGCT  750

seq1  TGGTCT-CTCCTGGTAGCTTGCATAGAAATTTTAAAAACTGTGAATTAAT  799
      |||||| |||||||||||||||||||||  ||| ||||||||||||| ||
seq2  TGGTCTCCTCCTGGTAGCTTGCATAGAA--TTTTAAAACTGTGAATT-AT  797

seq1  TTCCAGAGAGTTGCCTTTCAATTCAGTTCAAGATCAGTTTCTTCTA-GAC  848
      |||||||||||||||||||||||||||||| |||||| |||||||| |||
seq2  TTCCAGAGAGTTGCCTTTCAATTCAGTTCAGGATCAG-TTCTTCTAGGAC  846

seq1  ATTTCT-CTAAT-GTGTATAATATTTTCAGCAATAAGAACTTGTTTTTAA  896
      |||||| ||||| ||||||||   |||||||||||| ||||||||||  |
seq2  ATTTCTCCTAATGGTGTATAAATATTTCAGCAATAAAAACTTGTTTT--A  894

seq1  GAGT-GGGGAGGT  908
      |||| ||||||||
seq2  GAGTGGGGGAGGT  907


seq1: chr5_57126100_57127078
seq2: B6Ng01-338L20.g_64_1027 (reverse)

seq1  TGTACAATCTAATTCAGGTATTATAAC-TGTTGTCTATTGT-TATCTCAA  48
      |||||||||  ||||||||||| |||| |||||||||| || ||   |||
seq2  TGTACAATC--ATTCAGGTATT-TAACGTGTTGTCTATGGTATACTCCAA  47

seq1  G-AATTAGTGAATGTTTGGCTTCTAAATTTTGTAAATTCATAGTTTTGAT  97
      | ||| ||||||   ||||||||||||||   | || |||||| || |||
seq2  GAAATAAGTGAA--GTTGGCTTCTAAATT---TGAAATCATAG-TTGGAT  91

seq1  TCAATAATTCATCTTTGCATAAGCCAGAATATTTTAAGTTAACCTCTGTT  147
         |||| ||||||| |||| || |||||   |||||| |||||||||||
seq2  --CATAA-TCATCTTGGCAT-AGGCAGAAATATTTAAG-TAACCTCTGTT  136

seq1  CCTAAACTTAGTATTTTATATGAGTTTAATTAAATTTATAT-CTTGTGCC  196
       |||||||||||| ||||||||   |||  ||||||||||| ||||||| 
seq2  -CTAAACTTAGTA-TTTATATGGAGTTA--TAAATTTATATCCTTGTGC-  181

seq1  TAACAAGTCTTCTTGCCTTGAATTATAACCCTCCTCATTTGATGAATGAC  246
        ||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  -TACAAGTCTTCTGGCCTTGAA-TATAACCCTCCTCATTTGATGAATGAC  229

seq1  T-GTGAGTGAACAAACC-TATAATGTAGTTAAAATGTAATACTGAAAACA  294
      | | | ||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGGGGGGTGAACAAACCTTATAATGTAGTTAAAATGTAATACTGAAAACA  279

seq1  ATAAAATCTATATCCCCCAAAAAGAAAAGAAATAATTGCTAGTAGCTTCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCTATATCCCCCAAAAAGAAAAGAAATAATTGCTAGTAGCTTCA  329

seq1  TATAGATGTTAAAACTTTAACAAGAATCATTTACAGTCTAGAAATAATGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATGTTAAAACTTTAACAAGAATCATTTACAGTCTAGAAATAATGC  379

seq1  ACAGATTTTCAAAACACTGTATGAAACAAACAATTAAAGTTTGTCTCGTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTTCAAAACACTGTATGAAACAAACAATTAAAGTTTGTCTCGTC  429

seq1  GTTTTTTGTTGTTGTTTGTTTTTTTTTTTTTTTTTTAGCTTAACATCGGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTGTTGTTTGTTTTTTTTTTTTTTTTTTAGCTTAACATCGGT  479

seq1  TGTTTTTACCTTTATTTTGTTACTAGAGTCCCTTCAATTATGTATTGTAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTACCTTTATTTTGTTACTAGAGTCCCTTCAATTATGTATTGTAA  529

seq1  TTTTCAATTGGTAATCACAGAGTCTTTAGTTTATATTCATTTGAAAAGCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATTGGTAATCACAGAGTCTTTAGTTTATATTCATTTGAAAAGCT  579

seq1  TTTCCTTTTTCCTTCAATTATTAGTGATAGCCTTGATGATCTAGAAATAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTTCCTTCAATTATTAGTGATAGCCTTGATGATCTAGAAATAT  629

seq1  AGTGATCTTATTAAGCTGTGGTGTTAGTTCTCACCTTTAAGAGCTTAAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCTTATTAAGCTGTGGTGTTAGTTCTCACCTTTAAGAGCTTAAAA  679

seq1  TACTTCACTCAGTGACCTCTTTGGCTTTGATGAGTTTTTACTGAGAAATC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCACTCAGTGACCTCTTTGGCTTTGATGAGTTTTTACTGAGAAATC  729

seq1  TGTTATACTGATGGGCCTAACTTTTTATGTGCCTCAGTGCTTCTGTGAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATACTGATGGGCCTAACTTTTTATGTGCCTCAGTGCTTCTGTGAAA  779

seq1  AGTTTTAGGTGTTCTGTTCTTTTCTTTGTTCTCTGAATATTCTAATTAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGGTGTTCTGTTCTTTTCTTTGTTCTCTGAATATTCTAATTAAG  829

seq1  CTCACTAGTCTTTAAGACCTCATACTCTGCCTTTTAGTTGAACTAATCCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTAGTCTTTAAGACCTCATACTCTGCCTTTTAGTTGAACTAATCCA  879

seq1  TTTTATAAGCTTTCCACTGAGCTCTTTGTTTCATTTTTCTTGTCCATCTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAGCTTTCCACTGAGCTCTTTGTTTCATTTTTCTTGTCCATCTA  929

seq1  TTTAAAAATTGCAATTTGATTTTTTTATGGAATTC  979
      |||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATTGCAATTTGATTTTTTTATGGAATTC  964


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