BAC Information

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BAC

Clone NameB6Ng01-338P18
Chromosome5 (Build37)
Map Location 78,281,303 - 78,282,430
singlet/doubletsinglet
Overlap genenone
Upstream geneC530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338P18.bB6Ng01-338P18.g
ACCGA123111GA123112
length1,2251,130
definitionB6Ng01-338P18.b B6Ng01-338P18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcagtgaaaactctaaaagccttaaggggctgggcagatgttct
acaaactaacagaccacagatgccagcccagactactatagccagcaaaa
ctttcaatcacaataaatggaggaagaaaaatattccatgatcaaaccaa
atttaagtatcatctatttgtaaattcaaccctacagaaggcaatataag
gaaaatttcaacctgaggatgttaaccacacccgagaaaacatgaggaat
aagcaattccagataagcaaatcagaagagagaggaagcacccacaccta
cctacctacacacacacacacacacacacacacacacacacacacactac
gaatcaacaaagacttctcaacattacctttcaataccaatggcctcaat
tctccaatgaaaagactaacaaaatggatgtgaaaacaggacccttcttc
tactgtatctaagaaatatctgagaaaatagactttaaaccaaaactaat
aagaagaaatagaaaaggaagctacatactcatcaaagaaaaaaagtcac
caacgggatgatacagttcttaacatctatgccctaaacacaagagcaag
ctctcaagtttattttttaaaaaagcaactactgcagtttcaatcatata
ttgaccctcacacattgataatgggagaattatatacccttctctcaaca
agatacaggtcatcaagatgaaaactaaacagggaaatgttagagttaac
agatatcataaaataagtggatctaacaaatttacagaacacttcgcaca
aacacaaaagaatatcccttcttttcagtatcccctgtaactttctccaa
catttaccacacactaggatacaaagcaagtttcagcagcaacaaaaaat
tacaataacaccctgaatcttatctgaccaccatgataaaagctgggtat
tgtgttagagttttactgctggacagacaccatgaccaagcaactcttaa
gacacatttaattgggactggtttcacatgctaatatgatcacaccatac
attaatatatgtataaaattttttcaatattatgggctcatgtgttttga
tacatgcatacaggccatatgtgctggaacttcagctttgagagatatat
aagtacaacaaatcctattgcctttataattgagtccttatgttcagtgt
ttctccacatgtttggcttgtattc
gaattcaatgttgtgatgggagacacccagcacagctccgtgctcaggca
gttgtgaaagccaatatttcaggaacaaaaggagaaagaaagaaaaaaga
cacgtgagtgttaggagacggacgggccattgactttctatattatctct
ttcactgctgaacgaataaacacaaacaaacctttttaggtctttggaga
tgagcgggccaccctcacaggtggagtatttcctttatgaatgtggaggt
aaccatgcgagccttgtaaaaagtgtaaaaaaacggcgaagcacctggta
ctacgggaaaaggaaatggcagaagggtgaaccgaaagcagcagcgagga
atcatttgtctctgaatgagattcatttttcttttcatttcctttcccac
actgactgtccccattactcccacttcctctttatttcagccaacggagt
tagagatcgatagatacggcttcgcccgacattccttcattgtgccatgc
ttagaaatcagggaatcgggccaccggagggccaatacagtgtgacttag
tacagggcagggcgattagactttccaaacatgttcagggacagtttatg
ggttaattattaggatattagaataagcagaccttttcggggaggatttt
attctatcgttggaatttgacagtgttctaaaatgcttcggtggtagctg
ctccatacccgataaactattgacgcttaggaaaaagattctctcggctg
acaatgtttatcaaatgatgctcagaatgtaaaaagggaggcagaacact
agtggctgagagaaaacactatctgatttttttaaaaaagcatttctgaa
ttttagaaaaagaaaccttccctatgtatatttgtttagggacctttgtg
tttaaaggaagcatcttttcacgggactttctaagaatgggacagggagg
attggttgctgtagactaccgtgcaagtgagtctgacaccaaagtcagct
gctgctagattcacagagctggggaccacatctgcttaatagacttcttt
gttgacttcttgtggccgtataattcactacatctcttctgtctaacaca
cccttgattatttgtaccaggcctcttaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_78281303_78282430
seq2: B6Ng01-338P18.g_67_1196

seq1  GAATTCAATGTTGTGATGGGAGACACCCAGCACAGCTCCGTGCTCAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTTGTGATGGGAGACACCCAGCACAGCTCCGTGCTCAGGCA  50

seq1  GTTGTGAAAGCCAATATTTCAGGAACAAAAGGAGAAAGAAAGAAAAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAAAGCCAATATTTCAGGAACAAAAGGAGAAAGAAAGAAAAAAGA  100

seq1  CACGTGAGTGTTAGGAGACGGACGGGCCATTGACTTTCTATATTATCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGAGTGTTAGGAGACGGACGGGCCATTGACTTTCTATATTATCTCT  150

seq1  TTCACTGCTGAACGAATAAACACAAACAAACCTTTTTAGGTCTTTGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGCTGAACGAATAAACACAAACAAACCTTTTTAGGTCTTTGGAGA  200

seq1  TGAGCGGGCCACCCTCACAGGTGGAGTATTTCCTTTATGAATGTGGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGGGCCACCCTCACAGGTGGAGTATTTCCTTTATGAATGTGGAGGT  250

seq1  AACCATGCGAGCCTTGTAAAAAGTGTAAAAAAACGGCGAAGCACCTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGCGAGCCTTGTAAAAAGTGTAAAAAAACGGCGAAGCACCTGGTA  300

seq1  CTACGGGAAAAGGAAATGGCAGAAGGGTGAACCGAAAGCAGCAGCGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGGGAAAAGGAAATGGCAGAAGGGTGAACCGAAAGCAGCAGCGAGGA  350

seq1  ATCATTTGTCTCTGAATGAGATTCATTTTTCTTTTCATTTCCTTTCCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGTCTCTGAATGAGATTCATTTTTCTTTTCATTTCCTTTCCCAC  400

seq1  ACTGACTGTCCCCATTACTCCCACTTCCTCTTTATTTCAGCCAACGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTGTCCCCATTACTCCCACTTCCTCTTTATTTCAGCCAACGGAGT  450

seq1  TAGAGATCGATAGATACGGCTTCGCCCGACATTCCTTCATTGTGCCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATCGATAGATACGGCTTCGCCCGACATTCCTTCATTGTGCCATGC  500

seq1  TTAGAAATCAGGGAATCGGGCCACCGGAGGGCCAATACAGTGTGACTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATCAGGGAATCGGGCCACCGGAGGGCCAATACAGTGTGACTTAG  550

seq1  TACAGGGCAGGGCGATTAGACTTTCCAAACATGTTCAGGGACAGTTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGCAGGGCGATTAGACTTTCCAAACATGTTCAGGGACAGTTTATG  600

seq1  GGTTAATTATTAGGATATTAGAATAAGCAGACCTTTTCGGGGAGGATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATTATTAGGATATTAGAATAAGCAGACCTTTTCGGGGAGGATTTT  650

seq1  ATTCTATCGTTGGAATTTGACAGTGTTCTAAAATGCTTCGGTGGTAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATCGTTGGAATTTGACAGTGTTCTAAAATGCTTCGGTGGTAGCTG  700

seq1  CTCCATACCCGATAAACTATTGACGCTTAGGAAAAAGATTCTCTCGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATACCCGATAAACTATTGACGCTTAGGAAAAAGATTCTCTCGGCTG  750

seq1  ACAATGTTTATCAAATGATGCTCAGAATGTAAAAAGGGAGGCAGAACACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTTATCAAATGATGCTCAGAATGTAAAAAGGGAGGCAGAACACT  800

seq1  AGTGGCTGAGAGAAAACACTATCTGATTTTTTTAAAAAAGCATTTCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGAGAGAAAACACTATCTGATTTTTTTAAAAAAGCATTTCTGAA  850

seq1  -TTTAGAAAAAGAAACCTTCCCTATGTATA-TTGTTTAGGGACC-TTGTG  897
       ||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  TTTTAGAAAAAGAAACCTTCCCTATGTATATTTGTTTAGGGACCTTTGTG  900

seq1  TTTTAAGGAAGCATC-TTTCACGGGAC-TTCTAAGAATGGAACA-GGAGG  944
      ||| ||||||||||| ||||||||||| |||||||||||| ||| |||||
seq2  TTTAAAGGAAGCATCTTTTCACGGGACTTTCTAAGAATGGGACAGGGAGG  950

seq1  ATTGGTTGCTGTAGACTACCGTGCAAGTGAGTCTGACACCAAGGTCAGCT  994
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTGGTTGCTGTAGACTACCGTGCAAGTGAGTCTGACACCAAAGTCAGCT  1000

seq1  GCTGCTAGATTCACAGAGGCTGGGAACACATCTTGCTT-ATAGACTTCTT  1043
      ||||||||||||||||||   |||| |||||| ||||| |||||||||||
seq2  GCTGCTAGATTCACAGAGCTGGGGACCACATC-TGCTTAATAGACTTCTT  1049

seq1  TGTTTGACTTC-TGTGGCCGTATAATTCACCTACATCTTCTTTCCTGTCT  1092
      || |||||||| ||||||||||||||||| ||||||| ||||  ||||||
seq2  TG-TTGACTTCTTGTGGCCGTATAATTCA-CTACATC-TCTT--CTGTCT  1094

seq1  ACCACACCC-TGATTATTTGTAAACAAGCCTCTTAAG  1128
      | ||||||| ||||||||||| | || ||||||||||
seq2  AACACACCCTTGATTATTTGT-ACCAGGCCTCTTAAG  1130