BAC Information

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BAC

Clone NameB6Ng01-339H04
Chromosome5 (Build37)
Map Location 91,880,773 - 91,881,885
singlet/doubletsinglet
Overlap genenone
Upstream geneAlb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc
Downstream gene9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339H04.bB6Ng01-339H04.g
ACCGA123442GA123443
length1,1691,120
definitionB6Ng01-339H04.b B6Ng01-339H04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcatggatgtggagaaagaggaacactcctccattgttggtg
ggattgcagacttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctctactat
gttcatagcagccatatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgcactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttgctgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtgggatgctcacagtcagctaatggatggatcacagggctccc
aatgaagagctagagaaagtatccaaaggagctgaagagatctgcaaccc
tataggtggaacacattatgactaccatacccggagctctgactctagtg
catatgtatcaaagatggcctatcgtcatcactgcaaagagaggccatga
ctggccaaactttatatggccagtcagaacgcaggccaaagggatggttg
gcttaagggaatcccgtct
gaattctaagtataaaagactttaaatccagcttaatagaaaatggatgt
gatcaggagaaagtgccgattttgagggataaagactctaagccttacag
aactttaaattttctactattctattaggctaacatcatcacctctctct
atgagaatttagaaggaaaagtaaagaacacatatgtgtgtgcaagtaca
acacaaagggaaaggagagagagaacgagataggggtgagtgtgcatgct
ttagtctttaaatctaaaaaaaaaaaaaaaagaaaaagaaaaagaaaaaa
aagaaaagaaaaaaagtatgatcttcccagagcaaacaagtttctttcca
agaaaataaaagtaattagtgctactgtgtgatttgatcatctatacagt
gtgtattaaggtttcatttctacaaaatgggaatacattctgtgtgtaga
atgtacaagcagaagaaaggacagggagacatgcagaatagcaggcaaga
gattagaataaatatggagactaatgcaatagttctatgggaaatttgtc
atggagaaaatgaagcaggcatacagtagagaatggtttggtttctggtg
atctgttgaagggtcactcagagaattgtcttctcccatggcagctcatg
aataagaacttgggtaaatacattgaggaaatgcagtctcctgagacaga
cgcctaggagaagaaactgcactcacagattcctgagccaagggttgaga
atctgtacccagctccctcttccttctcatagtttcagtctgggcagaga
ttactcctcccactaacttcagatttgggcatgtatcttttatttgcctt
acttgtcttgaattagatgtaataaaatcatgttcacccagaagtcttga
ttactcttgagtgttttgccatctgccatcaggaggcatgcccttgatta
gctgctactcaacagaacccaaaggcaacaccacgaaaacagagctttga
gttccgaacacaggcatacctcagcaacccaccgagcattccaacaagag
tgagcttgctttctggctatgactccagcctataacatcattgttatgcg
aattaatgtctaacgtttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_91880773_91881885
seq2: B6Ng01-339H04.g_67_1186

seq1  GAATTCTAAGTATAAAAGACTTTAAATCCAGCTTAATAGAAAATGGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTATAAAAGACTTTAAATCCAGCTTAATAGAAAATGGATGT  50

seq1  GATCAGGAGAAAGTGCCGATTTTGAGGGATAAAGACTCTAAGCCTTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGAGAAAGTGCCGATTTTGAGGGATAAAGACTCTAAGCCTTACAG  100

seq1  AACTTTAAATTTTCTACTATTCTATTAGGCTAACATCATCACCTCTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAAATTTTCTACTATTCTATTAGGCTAACATCATCACCTCTCTCT  150

seq1  ATGAGAATTTAGAAGGAAAAGTAAAGAACACATATGTGTGTGCAAGTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATTTAGAAGGAAAAGTAAAGAACACATATGTGTGTGCAAGTACA  200

seq1  ACACAAAGGGAAAGGAGAGAGAGAACGAGATAGGGGTGAGTGTGCATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGGGAAAGGAGAGAGAGAACGAGATAGGGGTGAGTGTGCATGCT  250

seq1  TTAGTCTTTAAATCTAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTTTAAATCTAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAAA  300

seq1  AAGAAAAGAAAAAAAGTATGATCTTCCCAGAGCAAACAAGTTTCTTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAAAAAGTATGATCTTCCCAGAGCAAACAAGTTTCTTTCCA  350

seq1  AGAAAATAAAAGTAATTAGTGCTACTGTGTGATTTGATCATCTATACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAAAAGTAATTAGTGCTACTGTGTGATTTGATCATCTATACAGT  400

seq1  GTGTATTAAGGTTTCATTTCTACAAAATGGGAATACATTCTGTGTGTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTAAGGTTTCATTTCTACAAAATGGGAATACATTCTGTGTGTAGA  450

seq1  ATGTACAAGCAGAAGAAAGGACAGGGAGACATGCAGAATAGCAGGCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAAGCAGAAGAAAGGACAGGGAGACATGCAGAATAGCAGGCAAGA  500

seq1  GATTAGAATAAATATGGAGACTAATGCAATAGTTCTATGGGAAATTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAATAAATATGGAGACTAATGCAATAGTTCTATGGGAAATTTGTC  550

seq1  ATGGAGAAAATGAAGCAGGCATACAGTAGAGAATGGTTTGGTTTCTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAAATGAAGCAGGCATACAGTAGAGAATGGTTTGGTTTCTGGTG  600

seq1  ATCTGTTGAAGGGTCACTCAGAGAATTGTCTTCTCCCATGGCAGCTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTGAAGGGTCACTCAGAGAATTGTCTTCTCCCATGGCAGCTCATG  650

seq1  AATAAGAACTTGGGTAAATACATTGAGGAAATGCAGTCTCCTGAGACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAACTTGGGTAAATACATTGAGGAAATGCAGTCTCCTGAGACAGA  700

seq1  CGCCTAGGAGAAGAAACTGCACTCACAGATTCCTGAGCCAAGGGTTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTAGGAGAAGAAACTGCACTCACAGATTCCTGAGCCAAGGGTTGAGA  750

seq1  ATCTGTACCCAGCTCCCTCTTCCTTCTCATAGTTTCAGTCTGGGCAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTACCCAGCTCCCTCTTCCTTCTCATAGTTTCAGTCTGGGCAGAGA  800

seq1  TTACTCCTCCCACTAACTTCAGATTTGGGCATGTATCTTTTATTTGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCTCCCACTAACTTCAGATTTGGGCATGTATCTTTTATTTGCCTT  850

seq1  ACTTGTCTTGAATTAGATGTAATAAAATCATGTTCACCCAGAAGTCTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCTTGAATTAGATGTAATAAAATCATGTTCACCCAGAAGTCTTGA  900

seq1  TTACTCTTGAGTGTTTTGCCATCTGCCATCAGGAGGCATGCCC-TGA-TA  948
      ||||||||||||||||||||||||||||||||||||||||||| ||| ||
seq2  TTACTCTTGAGTGTTTTGCCATCTGCCATCAGGAGGCATGCCCTTGATTA  950

seq1  GCTGCTACTC-ACAGAA-CCAAAGGC-ACA-CACG-AAACAGAGC-TTGA  992
      |||||||||| |||||| |||||||| ||| |||| ||||||||| ||||
seq2  GCTGCTACTCAACAGAACCCAAAGGCAACACCACGAAAACAGAGCTTTGA  1000

seq1  G-TCCG-ACACAGGGATACCTCAAGCAACCCACCGAGCAATCC-ACAAGA  1039
      | |||| ||||||| ||||||| |||||||||||||||| ||| ||||||
seq2  GTTCCGAACACAGGCATACCTC-AGCAACCCACCGAGCATTCCAACAAGA  1049

seq1  GTGAAGCCTTGGTTTCTGGCTATGACTTCAG-CTATAACATCATTGTTAT  1088
      ||||   |||| ||||||||||||||| ||| ||||||||||||||||| 
seq2  GTGA--GCTTGCTTTCTGGCTATGACTCCAGCCTATAACATCATTGTTA-  1096

seq1  TGCAGATATTAATGT-TAACGTTTGT  1113
      ||| || |||||||| ||||||||||
seq2  TGC-GA-ATTAATGTCTAACGTTTGT  1120