BAC Information

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BAC

Clone NameB6Ng01-339P09
Chromosome5 (Build37)
Map Location 42,144,363 - 42,330,846
singlet/doubletdoublet
Overlap geneBapx1, A230054D04Rik, LOC384308
Upstream geneLOC208522, Rab28
Downstream geneLOC100040588, EG636612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339P09.bB6Ng01-339P09.g
ACCGA123811GA123812
length1,062534
definitionB6Ng01-339P09.b B6Ng01-339P09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,144,363 - 42,145,422)(42,330,313 - 42,330,846)
sequence
gaattcattctgaagactgcagagtgattctttcatttcatatcagtatg
tgccagaccctgcgctggaaatccgcacaacaagatcagttactggaaag
caactatctcctccattctttaagttaaatccccaccacgctggagtatt
tagctatatcgcaccaactaggccatccaagcacaggcactctgcaaaac
gctgaactctgtatttctttaaggttagtacctaaccaagaatgtctcta
cccatcccagttgggtctagaaatggctcactcaattctatagcatctgt
ccaattttgaaatttagttcattttcaatatgatgcagaaatggagagta
tattgccagagcaccgttttttttttttttgttttgttttgttttttgtt
ttttttttctggccctttgcttgtggtgggaggagttaatgtatagtttc
atacattcaagagggaggaggtaaggcaatcaggcaagaatccccagtac
tggcaaatgagagtgtgatctctaagaccagcctaggttttgccagaggc
ttttgtcccagaattcatgcccagctacttggaagaacacaagtgtaggt
ctacagatctctacagagggctcacctgtctctgcgcgtccccttttcag
ctttgttctgtgccccacagaatcagagtctgactttgaagtgcttttct
ggttttgttttttgtttttgtttgttgttggttttcttttcgtttttttt
ttttatttattttttgtttgtagtatgtgcgtgtcaaaccaaaggaagct
tggaagaatcctcgactctttgttaacaaatcttttccagatcatattct
tttgcccaaagaatgcccgaattcggtgggaagtgccctgtgttaggtgc
tctgtggtatctagctggcgcactccttcagaagagtcggagccacccac
tcttatcgtggaacctggatcctaaacacataggttccagtaacactact
cgggttggttgatctgttcagaaccgacttaattcatcgttgtgtttgag
gtgacccagact

gaattcattcataagcattattaatgaatacgaaggttagctctatgttt
ctgagaccacctttgcaaacacacacacacacacacatattttgtcctct
tatggaaggcaaaaccaaagctcacaaaacacaaggcctttgttgactgt
gttacactgctgataagaagtctaattaccaaaggccttaccccaaaaca
cctttctatttcctttggcttttttgacatcaagccatacataaatgctt
tcttatgcaggatctcgcttaatagaacattccagtgaaaggttgtgata
tctttttaggcaaacactagtaaccttttataattgcatcataactcaat
tatattatttcccccttccctttccttcccctaaacacacctatatactc
ccatttgttctctttgaaattcatggcctcttttattcattagttgtcct
tacatagatatatgtgtgtggtgtattatataaatggatattatatatat
atatatatatatatatatatatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_42144363_42145422
seq2: B6Ng01-339P09.b_50_1111

seq1  GAATTCATTCTGAAGACTGCAGAGTGATTCTTTCATTTCATATCAGTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTGAAGACTGCAGAGTGATTCTTTCATTTCATATCAGTATG  50

seq1  TGCCAGACCCTGCGCTGGAAATCCGCACAACAAGATCAGTTACTGGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGACCCTGCGCTGGAAATCCGCACAACAAGATCAGTTACTGGAAAG  100

seq1  CAACTATCTCCTCCATTCTTTAAGTTAAATCCCCACCACGCTGGAGTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATCTCCTCCATTCTTTAAGTTAAATCCCCACCACGCTGGAGTATT  150

seq1  TAGCTATATCGCACCAACTAGGCCATCCAAGCACAGGCACTCTGCAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATATCGCACCAACTAGGCCATCCAAGCACAGGCACTCTGCAAAAC  200

seq1  GCTGAACTCTGTATTTCTTTAAGGTTAGTACCTAACCAAGAATGTCTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACTCTGTATTTCTTTAAGGTTAGTACCTAACCAAGAATGTCTCTA  250

seq1  CCCATCCCAGTTGGGTCTAGAAATGGCTCACTCAATTCTATAGCATCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCAGTTGGGTCTAGAAATGGCTCACTCAATTCTATAGCATCTGT  300

seq1  CCAATTTTGAAATTTAGTTCATTTTCAATATGATGCAGAAATGGAGAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTGAAATTTAGTTCATTTTCAATATGATGCAGAAATGGAGAGTA  350

seq1  TATTGCCAGAGCACCGTTTTTTTTTTTTTTGTTTTGTTTTGTTTTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCAGAGCACCGTTTTTTTTTTTTTTGTTTTGTTTTGTTTTTTGTT  400

seq1  TTTTTTTTCTGGCCCTTTGCTTGTGGTGGGAGGAGTTAATGTATAGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTGGCCCTTTGCTTGTGGTGGGAGGAGTTAATGTATAGTTTC  450

seq1  ATACATTCAAGAGGGAGGAGGTAAGGCAATCAGGCAAGAATCCCCAGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTCAAGAGGGAGGAGGTAAGGCAATCAGGCAAGAATCCCCAGTAC  500

seq1  TGGCAAATGAGAGTGTGATCTCTAAGACCAGCCTAGGTTTTGCCAGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAATGAGAGTGTGATCTCTAAGACCAGCCTAGGTTTTGCCAGAGGC  550

seq1  TTTTGTCCCAGAATTCATGCCCAGCTACTTGGAAGAACACAAGTGTAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCCCAGAATTCATGCCCAGCTACTTGGAAGAACACAAGTGTAGGT  600

seq1  CTACAGATCTCTACAGAGGGCTCACCTGTCTCTGCGCGTCCCCTTTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGATCTCTACAGAGGGCTCACCTGTCTCTGCGCGTCCCCTTTTCAG  650

seq1  CTTTGTTCTGTGCCCCACAGAATCAGAGTCTGACTTTGAAGTGCTTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTGTGCCCCACAGAATCAGAGTCTGACTTTGAAGTGCTTTTCT  700

seq1  GGTTTTGTTTTTTGTTTTTGTTTGTTGTTGGTTTTCTTTTCTTTTTTTTT  750
      |||||||||||||||||||||||||||||||||||||||||    |||||
seq2  GGTTTTGTTTTTTGTTTTTGTTTGTTGTTGGTTTTCTTTTC---GTTTTT  747

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACC-AAGGAA  799
      ||||||| ||| |||||| ||| |  | | |   | |  |||| ||||||
seq2  TTTTTTTATTTATTTTTTGTTTGTAGTATGTGCGTGTCAAACCAAAGGAA  797

seq1  GC-TGGAAG-ATCCT-GACTC-TTGTTAACCAATC-TTTCCAGTACATAT  844
      || |||||| ||||| ||||| |||||||| |||| |||||||  |||||
seq2  GCTTGGAAGAATCCTCGACTCTTTGTTAACAAATCTTTTCCAGATCATAT  847

seq1  TCTTT--GCCAAAGAATGCCAG-ATTCGGTGGGAAGTG-CCTGTGTAAGG  890
      |||||   |||||||||||| | ||||||||||||||| ||||||| |||
seq2  TCTTTTGCCCAAAGAATGCCCGAATTCGGTGGGAAGTGCCCTGTGTTAGG  897

seq1  TGC-CTGT-GTATCTAGCTGGCGCACT-CATCAG-AGAGTCAGGAAGCAC  936
      ||| |||| |||||||||||||||||| | |||| |||||| |||  |||
seq2  TGCTCTGTGGTATCTAGCTGGCGCACTCCTTCAGAAGAGTC-GGAGCCAC  946

seq1  CAACTC-TATCAGTGAACCTGGTATCGCTAACCAC-TATGTTCAGGTAAT  984
      | |||| ||||   |||||||| ||| |||| ||| || ||||  |||| 
seq2  CCACTCTTATCGTGGAACCTGG-ATC-CTAAACACATAGGTTCCAGTAAC  994

seq1  ACATACTCGGGTGGTGTGATCTGCTCAGAACAGACTTTAAAACTCAACGT  1034
      || ||||||||| |  ||||||| ||||||| |||||   || ||| || 
seq2  AC-TACTCGGGTTGGTTGATCTGTTCAGAACCGACTT---AATTCATCG-  1039

seq1  TTGTGTATGAGGTGACCCCAAAGACT  1060
      |||||| |||||||||||   |||||
seq2  TTGTGTTTGAGGTGACCC---AGACT  1062


seq1: chr5_42330313_42330846
seq2: B6Ng01-339P09.g_68_601 (reverse)

seq1  ATATATATATATATATATATATATATATATATATATATATATAATATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATAATATCCA  50

seq1  TTTATATAATACACCACACACATATATCTATGTAAGGACAACTAATGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAATACACCACACACATATATCTATGTAAGGACAACTAATGAAT  100

seq1  AAAAGAGGCCATGAATTTCAAAGAGAACAAATGGGAGTATATAGGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGCCATGAATTTCAAAGAGAACAAATGGGAGTATATAGGTGTGT  150

seq1  TTAGGGGAAGGAAAGGGAAGGGGGAAATAATATAATTGAGTTATGATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGAAGGAAAGGGAAGGGGGAAATAATATAATTGAGTTATGATGCA  200

seq1  ATTATAAAAGGTTACTAGTGTTTGCCTAAAAAGATATCACAACCTTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAAGGTTACTAGTGTTTGCCTAAAAAGATATCACAACCTTTCAC  250

seq1  TGGAATGTTCTATTAAGCGAGATCCTGCATAAGAAAGCATTTATGTATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGTTCTATTAAGCGAGATCCTGCATAAGAAAGCATTTATGTATGG  300

seq1  CTTGATGTCAAAAAAGCCAAAGGAAATAGAAAGGTGTTTTGGGGTAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGTCAAAAAAGCCAAAGGAAATAGAAAGGTGTTTTGGGGTAAGGC  350

seq1  CTTTGGTAATTAGACTTCTTATCAGCAGTGTAACACAGTCAACAAAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTAATTAGACTTCTTATCAGCAGTGTAACACAGTCAACAAAGGCC  400

seq1  TTGTGTTTTGTGAGCTTTGGTTTTGCCTTCCATAAGAGGACAAAATATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTTGTGAGCTTTGGTTTTGCCTTCCATAAGAGGACAAAATATGT  450

seq1  GTGTGTGTGTGTGTGTTTGCAAAGGTGGTCTCAGAAACATAGAGCTAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTTTGCAAAGGTGGTCTCAGAAACATAGAGCTAACC  500

seq1  TTCGTATTCATTAATAATGCTTATGAATGAATTC  534
      ||||||||||||||||||||||||||||||||||
seq2  TTCGTATTCATTAATAATGCTTATGAATGAATTC  534


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