BAC Information

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BAC

Clone NameB6Ng01-341E07
Chromosome5 (Build37)
Map Location 84,204,090 - 84,296,309
singlet/doubletdoublet
Overlap geneLOC231368
Upstream geneLOC100039434, Srd5a2l2, LOC100039608
Downstream geneEpha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341E07.bB6Ng01-341E07.g
ACCGA124704GA124705
length1,1681,094
definitionB6Ng01-341E07.b B6Ng01-341E07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,204,090 - 84,205,274)(84,295,201 - 84,296,309)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
tttcggagtccaccttcttgagttcttgtgtttcctcttaaggcttcttc
ctggcactagacactagacactagatagcccatggacctagtgtaaaaga
tattcttctgttctttaaaaaagaagagcaacaaaatgacattctcagta
ctcagataagtacttgaacactcattccatcttaaatagaggcctccatc
aaaactatctccatagagatcaataaaaccagaggaagtggcgacaaaag
gatttaatatccagagggaacaataagttataagaccctataaataagtg
gttctcaacatttctattgctgtgaccctttagtccattttctcatttta
tggtgacccccaataataaaattatttttgttactactgcataactaatt
ttgatgctgttatgattataatgcaaatatctgttacctagtatatccaa
tatgtgaccactgtgaaagggccattcttcccccaatgtgggagagaagc
atagggtgagaaccactgctgtaaaaccacatgagcatagctcacatgaa
ctcacatagactggagagcagcacgcagaaggcctgcaagtgtcctttac
atatacatctcacagattccaatttaggtattttaatgggattcctgaat
gtgcaaatgagtagatctttaattcttgtgccatcccttacattcttttc
tcttttttctttgtcttatccagctctgatgtgatagtttttttttctct
tactccattttattttgtcatattttattattctttagaagtttgtttgt
tttctgagagacaaaaagggagtgtattcagatacaaggggacttgggga
ggaactctgagtaacagaacatgggataatcataattaggatatattgtg
tgagaaattttctgttttcaataataggaagagcataataaaaaaaaaac
actatcacaattttaactcaacagaaagaacggaaacataataacctgag
ttattatgtcacaaaaaggcatcatatatttgcatggcagtttgtatatc
agaactaagccatcattataaaacatgttcaggtaccactactcaagtag
catttctcagtactatgg

gaattcaatagagatctgtctgttcggtaattagaataaggttaagacag
tgaagaatatgtgctctgaggatcaattagaaagctgtagaaaatcatgt
ggaagtttccatacatacccatccaattgtgttggaggactgtaggtcag
catgccccacataattttcttctggtgtgaagcattatttacagtgatcc
catttagtgaatgctatttttgtcttattaattatctagttgcttatcat
gtttactattagttactgcggtgtcagggaaggcattgcagcagaggcag
ggtgttgctgaccacattgcatctgcaatcagaaagcagagtgagcaaaa
aaaaccagttgggcctatagaaccttaatcacacctcacacctagtgatc
cacgtactccagtgatgctgcatcacctaaaggattcacatcctacccag
acattgtcacaagctagaaaccacgtcttcagtcacgagaaatagatccc
attaaaagcacaggttgttttcaagtatttttaggaaaagaaattggttt
cataattttgtgatatatgatttttaaagtattaaaatgtcaaaaagatc
acttattactaatgagtatcacaaacaaacaaacaaacaaacaaacaaca
aacaaacatgttttagggaccagagttagttcaatgagtaagagtgcttg
ttctccaagaacaagaatatgagttcaaatccttaggttctacataaaaa
gttggatatttgtgtaccaccaacattaggggcagtggcaggcagatttc
caagtttgccaggtctaggcagcctagaaaaatggaaagcacccagtttg
atgaatgacgtaattgtaacttttattcattgagtaggcttgctgctgag
tgagctccgtctttctagtctttctgatctctggctggctggttcagctc
agctcttctggtccaaactcctcttcaggtgattatgtcaaagtggcttc
actcaacttctgatgatgctctgctagctcagatactctggcatctcttc
tatctcagctcttctcatacttactcatcctatctttacttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84204090_84205274
seq2: B6Ng01-341E07.b_44_1211

seq1  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTTCGGAGTCCACCTTCTTGAGTTCTTGTGTTTCCTCTTAAGGCTTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGAGTCCACCTTCTTGAGTTCTTGTGTTTCCTCTTAAGGCTTCTTC  100

seq1  CTGGCACTAGACACTAGACACTAGATAGCCCATGGACCTAGTGTAAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACTAGACACTAGACACTAGATAGCCCATGGACCTAGTGTAAAAGA  150

seq1  TATTCTTCTGTTCTTTAAAAAAGAAGAGCAACAAAATGACATTCTCAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCTGTTCTTTAAAAAAGAAGAGCAACAAAATGACATTCTCAGTA  200

seq1  CTCAGATAAGTACTTGAACACTCATTCCATCTTAAATAGAGGCCTCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATAAGTACTTGAACACTCATTCCATCTTAAATAGAGGCCTCCATC  250

seq1  AAAACTATCTCCATAGAGATCAATAAAACCAGAGGAAGTGGCGACAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATCTCCATAGAGATCAATAAAACCAGAGGAAGTGGCGACAAAAG  300

seq1  GATTTAATATCCAGAGGGAACAATAAGTTATAAGACCCTATAAATAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAATATCCAGAGGGAACAATAAGTTATAAGACCCTATAAATAAGTG  350

seq1  GTTCTCAACATTTCTATTGCTGTGACCCTTTAGTCCATTTTCTCATTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAACATTTCTATTGCTGTGACCCTTTAGTCCATTTTCTCATTTTA  400

seq1  TGGTGACCCCCAATAATAAAATTATTTTTGTTACTACTGCATAACTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACCCCCAATAATAAAATTATTTTTGTTACTACTGCATAACTAATT  450

seq1  TTGATGCTGTTATGATTATAATGCAAATATCTGTTACCTAGTATATCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCTGTTATGATTATAATGCAAATATCTGTTACCTAGTATATCCAA  500

seq1  TATGTGACCACTGTGAAAGGGCCATTCTTCCCCCAATGTGGGAGAGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGACCACTGTGAAAGGGCCATTCTTCCCCCAATGTGGGAGAGAAGC  550

seq1  ATAGGGTGAGAACCACTGCTGTAAAACCACATGAGCATAGCTCACATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTGAGAACCACTGCTGTAAAACCACATGAGCATAGCTCACATGAA  600

seq1  CTCACATAGACTGGAGAGCAGCACGCAGAAGGCCTGCAAGTGTCCTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATAGACTGGAGAGCAGCACGCAGAAGGCCTGCAAGTGTCCTTTAC  650

seq1  ATATACATCTCACAGATTCCAATTTAGGTATTTTAATGGGATTCCTGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATCTCACAGATTCCAATTTAGGTATTTTAATGGGATTCCTGAAT  700

seq1  GTGCAAATGAGTAGATCTTTAATTCTTGTGCCATCCCTTACATTCTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAATGAGTAGATCTTTAATTCTTGTGCCATCCCTTACATTCTTTTC  750

seq1  TCTTTTTTCTTTGTCTTATCCAGCTCTGATGTGATAGTTTTTTTTTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTCTTTGTCTTATCCAGCTCTGATGTGATAGTTTTTTTTTCTCT  800

seq1  TACTCCATTTTATTTTGTCATATTTTATTATTCTTTAGAAGTTTGTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCATTTTATTTTGTCATATTTTATTATTCTTTAGAAGTTTGTTTGT  850

seq1  TTTCTGAGAGACAAAAAGGGAGTGTATTCAGATACAAGGGGACTTGGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGAGACAAAAAGGGAGTGTATTCAGATACAAGGGGACTTGGGGA  900

seq1  GGAACTCTGAGTAACAGAACATGGGATAATCATAATTAGGATATATTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCTGAGTAACAGAACATGGGATAATCATAATTAGGATATATTGTG  950

seq1  TGAGAAATTTTCTGTTTTCAATAATAGGAAGAGCATAATTAAAAAAAAAA  1000
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  TGAGAAATTTTCTGTTTTCAATAATAGGAAGAGCATAAT--AAAAAAAAA  998

seq1  ACACTATCACAATTTTAACTCAAACAAGAAAGAAACGGAAACATAATAAC  1050
      |||||||||||||||||||||||   |||||| |||||||||||||||||
seq2  ACACTATCACAATTTTAACTCAA--CAGAAAG-AACGGAAACATAATAAC  1045

seq1  CTGAGTTATTATGTCACAAAAAGGCATTCATATATTTGCAATGGCAGTTT  1100
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  CTGAGTTATTATGTCACAAAAAGGCA-TCATATATTTGC-ATGGCAGTTT  1093

seq1  GTATATCAGAACATAAGCACATCATTTATAAAACATGTTCAAGTACCACT  1150
      |||||||||||| ||||| ||||| |||||||||||||||| ||||||||
seq2  GTATATCAGAAC-TAAGC-CATCA-TTATAAAACATGTTCAGGTACCACT  1140

seq1  TAACTCAAAATTAAGCATGTTCTCAGTACCTATGG  1185
        ||||||     ||||| ||||||||| ||||||
seq2  --ACTCAA---GTAGCAT-TTCTCAGTA-CTATGG  1168


seq1: chr5_84295201_84296309
seq2: B6Ng01-341E07.g_66_1159 (reverse)

seq1  CAGAAGTAAAGATAGAATGAGTAAGTAATGAGAAGGAGCTGGAAGATTAG  50
      ||||||||||||||| |||||||||| ||||||| ||||||  ||| |||
seq2  CAGAAGTAAAGATAGGATGAGTAAGT-ATGAGAA-GAGCTG--AGA-TAG  45

seq1  AAGAGATTGCCAGAGTTAATCTGAAGCTAAGCAGAGCAATTCAATCAGAA  100
      |||||| |||||||||  ||||| |||| |||||||||  || |||||||
seq2  AAGAGA-TGCCAGAGT--ATCTG-AGCT-AGCAGAGCA--TC-ATCAGAA  87

seq1  GTTGAGTGAAGCCACTTTGACATAATCAACTTGAAGAGGAGTTTGGACCA  150
      ||||||||||||||||||||||||||| || |||||||||||||||||||
seq2  GTTGAGTGAAGCCACTTTGACATAATC-ACCTGAAGAGGAGTTTGGACCA  136

seq1  GAAGAGCTGAGCTGAACCAGCCAGCCAGAGATCAGAAAGAACTAGAAAGA  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAAGAGCTGAGCTGAACCAGCCAGCCAGAGATCAGAAAG-ACTAGAAAGA  185

seq1  CGGAGCTCACTCAGCAGCAAGCCTACTCAATGAATAAAAGTTACAATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCTCACTCAGCAGCAAGCCTACTCAATGAATAAAAGTTACAATTAC  235

seq1  GTCATTCATCAAACTGGGTGCTTTCCATTTTTCTAGGCTGCCTAGACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCATCAAACTGGGTGCTTTCCATTTTTCTAGGCTGCCTAGACCTG  285

seq1  GCAAACTTGGAAATCTGCCTGCCACTGCCCCTAATGTTGGTGGTACACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTTGGAAATCTGCCTGCCACTGCCCCTAATGTTGGTGGTACACAA  335

seq1  ATATCCAACTTTTTATGTAGAACCTAAGGATTTGAACTCATATTCTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAACTTTTTATGTAGAACCTAAGGATTTGAACTCATATTCTTGTT  385

seq1  CTTGGAGAACAAGCACTCTTACTCATTGAACTAACTCTGGTCCCTAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGAACAAGCACTCTTACTCATTGAACTAACTCTGGTCCCTAAAAC  435

seq1  ATGTTTGTTTGTTGTTTGTTTGTTTGTTTGTTTGTTTGTGATACTCATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTTTGTTGTTTGTTTGTTTGTTTGTTTGTTTGTGATACTCATTA  485

seq1  GTAATAAGTGATCTTTTTGACATTTTAATACTTTAAAAATCATATATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAGTGATCTTTTTGACATTTTAATACTTTAAAAATCATATATCAC  535

seq1  AAAATTATGAAACCAATTTCTTTTCCTAAAAATACTTGAAAACAACCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATGAAACCAATTTCTTTTCCTAAAAATACTTGAAAACAACCTGT  585

seq1  GCTTTTAATGGGATCTATTTCTCGTGACTGAAGACGTGGTTTCTAGCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAATGGGATCTATTTCTCGTGACTGAAGACGTGGTTTCTAGCTTG  635

seq1  TGACAATGTCTGGGTAGGATGTGAATCCTTTAGGTGATGCAGCATCACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATGTCTGGGTAGGATGTGAATCCTTTAGGTGATGCAGCATCACTG  685

seq1  GAGTACGTGGATCACTAGGTGTGAGGTGTGATTAAGGTTCTATAGGCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACGTGGATCACTAGGTGTGAGGTGTGATTAAGGTTCTATAGGCCCA  735

seq1  ACTGGTTTTTTTTGCTCACTCTGCTTTCTGATTGCAGATGCAATGTGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTTTTTTTGCTCACTCTGCTTTCTGATTGCAGATGCAATGTGGTC  785

seq1  AGCAACACCCTGCCTCTGCTGCAATGCCTTCCCTGACACCGCAGTAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACACCCTGCCTCTGCTGCAATGCCTTCCCTGACACCGCAGTAACTA  835

seq1  ATAGTAAACATGATAAGCAACTAGATAATTAATAAGACAAAAATAGCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAACATGATAAGCAACTAGATAATTAATAAGACAAAAATAGCATT  885

seq1  CACTAAATGGGATCACTGTAAATAATGCTTCACACCAGAAGAAAATTATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAATGGGATCACTGTAAATAATGCTTCACACCAGAAGAAAATTATG  935

seq1  TGGGGCATGCTGACCTACAGTCCTCCAACACAATTGGATGGGTATGTATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCATGCTGACCTACAGTCCTCCAACACAATTGGATGGGTATGTATG  985

seq1  GAAACTTCCACATGATTTTCTACAGCTTTCTAATTGATCCTCAGAGCACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCCACATGATTTTCTACAGCTTTCTAATTGATCCTCAGAGCACA  1035

seq1  TATTCTTCACTGTCTTAACCTTATTCTAATTACCGAACAGACAGATCTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCACTGTCTTAACCTTATTCTAATTACCGAACAGACAGATCTCT  1085

seq1  ATTGAATTC  1109
      |||||||||
seq2  ATTGAATTC  1094


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