BAC Information

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BAC

Clone NameB6Ng01-341N20
Chromosome5 (Build37)
Map Location 79,836,646 - 79,837,705
singlet/doubletsinglet
Overlap genenone
Upstream geneMthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341N20.bB6Ng01-341N20.g
ACCGA125126GA125127
length4701,041
definitionB6Ng01-341N20.b B6Ng01-341N20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ctgatctttccaagatgtttaccatgaaggggtgttgaatattgttaaat
gctttctcagcatctaatgacatgatcacatgtttttttttttcctttga
gtttttctatatagtggatcgtgttgatggatttccgtattctaaacgat
ccctgcattcctgggataaagcctgcttgatcatgatggatgattgtttt
gatgtgttcttggattcagtttttgagaattttattaagtttttttgcat
taatatttataagagaaattgatctgattttgcctttctttgttgggtct
ttgtgtggtttagggattagtgtaattgtggcttcatagaacaaattggg
tagtgttccttctgtttctattttgtggaatagtttgtagagaattggta
ttaggtcttctttgaaggccagagagaattctgcgggatacatacctggt
cctggggttcttttggtctg
gaattccatattagactgattgccccctaattctctccatttctatacat
tgcgcagttgttaatctccatgttaactaccatctactgcaagaaattct
gtgttgaatgttgagcaatgttctgaactgtgggtatagctatatgtcat
tagggtttcttctgtgttcctttagaagaaataacattagtaggtcttcc
catcagcctaggacccatccagtctcagggattgtactcttttgcaatgt
tatatatatatatggatccatctcactgagggcctcagtccagtcaaaaa
gtgcttgctttctttcataatatttgcgcaggtattttgccactgtattg
cagaggttgtttacagataagaatgaagaaagagggcacatgtaacctac
ctggtcacacccaggcgtggcaattttgggatccctgaaaagaacatctt
tgtgggtttgagggagtcacagagggatgagaatgaaggaaatgctgaaa
atgctggttgaaaagaacaaaaagaaacttgggtccagctcaccataagg
caggttctaaagggcatggaagtgggctttaataacaaagatttgatgtg
aaacattttgttatttggaagccactctcctttacaaagttgaaggtaaa
taggacagctaactatttagttgtgaggatttctgatgaaagttccatgg
gaaaatattctagtctatcatacaaagatttttctcaagactaaaattgt
caagatttacagttaattccacatagaactaagcatgaactatcaggatt
ttttgtcatagcagcctctatgggatggcaggtatttctgattattggaa
tgcacaaaaagaaaagtaaaatagatctgtgtaattattgtagctgaaaa
ctacttttaaaaaacattttctaatttaatgtgtttaaatagaattgaat
ttattgagatgaccatttttttctttgagcctaatagcttccaagtaaag
tagaattccaaacctgatgtcttttcataccactaatcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79836646_79837705
seq2: B6Ng01-341N20.g_69_1109

seq1  GAATTCCATATCAGACTGTTTGCCGCC-AATTCTCTCCATTTCTATACAT  49
      ||||||||||| |||||| ||||| || ||||||||||||||||||||||
seq2  GAATTCCATATTAGACTGATTGCCCCCTAATTCTCTCCATTTCTATACAT  50

seq1  TGTGCAGTTGTTAATCTCCATGTTAACTACCATCTACTGCAAGAAATTCT  99
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAGTTGTTAATCTCCATGTTAACTACCATCTACTGCAAGAAATTCT  100

seq1  GTGTTGTGTGTTGAGCAATGTTCTGAACTGTGGGTATAGCTATATGTCAT  149
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAATGTTGAGCAATGTTCTGAACTGTGGGTATAGCTATATGTCAT  150

seq1  TAGGGTTTCTTCCATGTTCCTTTAGCAGAAATAACTTTAGTAGGTCTTCC  199
      ||||||||||||  ||||||||||| ||||||||| ||||||||||||||
seq2  TAGGGTTTCTTCTGTGTTCCTTTAGAAGAAATAACATTAGTAGGTCTTCC  200

seq1  CATCAGCCTAGGACATATCTAGTCTCAGGGATTGTACTCTTTTGCAATGT  249
      ||||||||||||||  ||| ||||||||||||||||||||||||||||||
seq2  CATCAGCCTAGGACCCATCCAGTCTCAGGGATTGTACTCTTTTGCAATGT  250

seq1  TATATAT-----TGGATCCATCTCACTGAGGGGCTCAGTACAATCACAAA  294
      |||||||     |||||||||||||||||||| |||||| || ||| |||
seq2  TATATATATATATGGATCCATCTCACTGAGGGCCTCAGTCCAGTCAAAAA  300

seq1  ATGCTTGCTTTCTCACATAATATTTGTGAACGTATTTCAGCAGTGTATTG  344
       ||||||||||||  ||||||||||| | | ||||||   || |||||||
seq2  GTGCTTGCTTTCTTTCATAATATTTGCGCAGGTATTTTGCCACTGTATTG  350

seq1  CAGAGGCTGTTTACAGATAAGAATGTAGAAGAAAGAGGGCACATGTAACC  394
      |||||| |||||||||||||||||   |||||||||||||||||||||||
seq2  CAGAGGTTGTTTACAGATAAGAAT---GAAGAAAGAGGGCACATGTAACC  397

seq1  TACCTGGTCCCACCCAGGCATGACAATTTGGGGGTCCCTGAAAAGAGCAT  444
      ||||||||| ||||||||| || |||||| ||| |||||||||||| |||
seq2  TACCTGGTCACACCCAGGCGTGGCAATTTTGGGATCCCTGAAAAGAACAT  447

seq1  CTTTGTGGGTTTGAGGGGGTCACAAAGGGATGAGAATGAAGAAAATGCTG  494
      ||||||||||||||||| |||||| |||||||||||||||| ||||||||
seq2  CTTTGTGGGTTTGAGGGAGTCACAGAGGGATGAGAATGAAGGAAATGCTG  497

seq1  AAAATGATTGTTGAAAAGAACAAACAACAACAACAACAACAAAAACCTTG  544
      |||||| | |||||||||||||||                || || ||||
seq2  AAAATGCTGGTTGAAAAGAACAAA----------------AAGAAACTTG  531

seq1  GGTCCAGGTCACCATAAGGCAAATTCTAAAGGGCATGGAAGTGGGCTTTA  594
      ||||||| |||||||||||||  |||||||||||||||||||||||||||
seq2  GGTCCAGCTCACCATAAGGCAGGTTCTAAAGGGCATGGAAGTGGGCTTTA  581

seq1  ATAACAAAGATTTGATGCAAAACATTTTGTTATTTGGAAGCCACTCTCCT  644
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  ATAACAAAGATTTGATGTGAAACATTTTGTTATTTGGAAGCCACTCTCCT  631

seq1  TTACAACATTGAAGGTAAATAGGACAGATAACTGTTTAATTGTGAGGATT  694
      ||||||  ||||||||||||||||||| ||||| |||| |||||||||||
seq2  TTACAAAGTTGAAGGTAAATAGGACAGCTAACTATTTAGTTGTGAGGATT  681

seq1  TCTGATGAAACTTCCAAGGGAAAATATTTTAGTCTATCATATAAAGA-TT  743
      |||||||||| ||||| ||||||||||| |||||||||||| ||||| ||
seq2  TCTGATGAAAGTTCCATGGGAAAATATTCTAGTCTATCATACAAAGATTT  731

seq1  TTCTCAAGACTAAAATTCTCAGGATTTACAGTTAATTCCACATGGAACTA  793
      ||||||||||||||||| ||| ||||||||||||||||||||| ||||||
seq2  TTCTCAAGACTAAAATTGTCAAGATTTACAGTTAATTCCACATAGAACTA  781

seq1  AGTATGAACTGTCAAGATTTTTTTTGTCATAGCAGCCTGTATGGGATTGC  843
      || ||||||| ||| ||  ||||||||||||||||||| |||||||| ||
seq2  AGCATGAACTATCAGGA--TTTTTTGTCATAGCAGCCTCTATGGGATGGC  829

seq1  AGGTATTTCTGATTCTTGGAGTGCACAAATAAAAAAGT-AAATAGATCTA  892
      |||||||||||||| ||||| |||||||| | |||||| |||||||||| 
seq2  AGGTATTTCTGATTATTGGAATGCACAAAAAGAAAAGTAAAATAGATCTG  879

seq1  TGTATATTATTTTAGCTGAAAACTACTTGTTAAAAACATTTTCTAGTTTA  942
      |||| |||||| |||||||||||||||| | |||||||||||||| ||||
seq2  TGTA-ATTATTGTAGCTGAAAACTACTTTTAAAAAACATTTTCTAATTTA  928

seq1  ATGTTGTTTAAATAGAAATTGAATTTA-TGAGACGAACTTTTTTTTTCTT  991
      ||| ||||||||||| ||||||||||| ||||| || | |||||||  ||
seq2  ATG-TGTTTAAATAG-AATTGAATTTATTGAGATGACCATTTTTTTCTTT  976

seq1  GAGCCTATCATATAGCTTCTAAGAAAAAGTAGAATTC--AAACTGACGTC  1039
      |||||||    |||||||| |||  ||||||||||||  || |||| |||
seq2  GAGCCTA----ATAGCTTCCAAG-TAAAGTAGAATTCCAAACCTGATGTC  1021

seq1  TTATCATAATCACTAATCAAA  1060
      || |||| | |||||||||||
seq2  TTTTCAT-ACCACTAATCAAA  1041