BAC Information

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BAC

Clone NameB6Ng01-342N21
Chromosome5 (Build37)
Map Location 17,828,622 - 17,829,730
singlet/doubletsinglet
Overlap geneGnai1
Upstream geneLOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3
Downstream geneLOC100041818, LOC668167, 4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342N21.bB6Ng01-342N21.g
ACCGA125813GA125814
length1,1001,093
definitionB6Ng01-342N21.b B6Ng01-342N21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacaaaccccattatttcctcacaaagagaaacattaaattccga
ttaagtattcagaacttgcgcttttgtattgacttagttcactgtgtctg
tggcatgagggacttaggtaaagtcacattgtcatttatcatgcttcggc
tcgctctcatcttggggagacagatggtgagaaagagcagtggcgctaat
cttttattgatttccattgtactcagatcttgtacagagaggccttgtta
tggctagaatataagaatcatgtggttgtttcattgatgtttatatgcaa
cttaacattttaaaatcacttcccgaatcagggtagacaaaatccacgct
gtgtagtcgttttccctatttccttcaaagtcacacattgatggcatctt
gtgacacttttaagactaaagggctcacgtggggacaagcctgttggcaa
tgataagagttttgaatgttctgactcagataattcatagattactcttt
cttctgccccagttcccactctgtgactgccattattgttcattctgggc
tcttgagtgtcacacaggtaaagtcgtctgtgtaagggatcttcagttct
tacctggtagcttctatagtcctagactttctccccttaacttttcctct
ctcatcactcttcaaatgaaaaccatttgtctttttctaaatcatctcct
ggatgtaatcttttttctcaggagtcttccaagaaaaatgggttttgaag
cataattcttgaaatggcagtgggcaaatggaactcaaaatatggcagaa
gaccttgtatttgcgtgtctgcgagcttaatttatagtaacttctttata
attctttattgtcactgcttgttttttcattaatttaaggtctcacaatg
agttactaaatatgcttttgattcatatgaatagcaggtgtcagtaactt
aagtaaggcgtcctgtctgctaatcacttccttaccactcagtgtgaagg
tattccctgccacccttctcccttatatgaagaaacacaagtctaatctg
tggctgttccgttgtgtctcgggtgctgtcatgatagctgtatagcccac


gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgctccaactggtaacaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaatacatgaaactcaag
aagaatgaagactgacgtgtggacactatgcccctccttagatatgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaaaggtttttattga
aaggacccagatgtagctgtctctttgtgagaactatgccgggccttagc
aacacagaagtggatgctcacagtcagctatggatggatcataggggctc
caatgtaggagcctagagaatgtagccaaggagcctaagggatctgcaac
cccttataggtggaacaacattatgactacccagtaccccggaagctctt
tgactctaagctgcaatatatatccaaaagaatgggccctagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17828622_17829730
seq2: B6Ng01-342N21.b_47_1146 (reverse)

seq1  GTGGGCTATACAGCTATCATTGGACAGGCACACTGGGAGACACAACGGAA  50
      ||||||||||||||||||||  |||| |||| |   |||||||||||| |
seq2  GTGGGCTATACAGCTATCAT--GACA-GCACCC---GAGACACAACGG-A  43

seq1  ACAGCCCACAGGATAAGACTTGTGTTTCTTCATATAAGGGGAGAAGGGGT  100
      |||| ||||| ||| |||||||||||||||||||||| ||||||| ||||
seq2  ACAG-CCACA-GATTAGACTTGTGTTTCTTCATATAA-GGGAGAA-GGGT  89

seq1  GGCAGGAAATACC-TCACACTGAGTGGTAAGGAAGTGATTAGCAGACAGG  149
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGAATACCTTCACACTGAGTGGTAAGGAAGTGATTAGCAGACAGG  139

seq1  ACGCCTTACTTAAGTTACTGACACCTGCTATTCATATGAATCAAAAGCAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTACTTAAGTTACTGACACCTGCTATTCATATGAATCAAAAGCAT  189

seq1  ATTTAGTAACTCATTGTGAGACCTTAAATTAATG-AAAAACAAGCAGTGA  248
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTTAGTAACTCATTGTGAGACCTTAAATTAATGAAAAAACAAGCAGTGA  239

seq1  CAATAAAGAATTATAAAGAAGTTACTATAAATTAAGCTCGCAGACACGCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAGAATTATAAAGAAGTTACTATAAATTAAGCTCGCAGACACGCA  289

seq1  AATACAAGGTCTTCTGCCATATTTTGAGTTCCATTTGCCCACTGCCATTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAGGTCTTCTGCCATATTTTGAGTTCCATTTGCCCACTGCCATTT  339

seq1  CAAGAATTATGCTTCAAAACCCATTTTTCTTGGAAGACTCCTGAGAAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTATGCTTCAAAACCCATTTTTCTTGGAAGACTCCTGAGAAAAA  389

seq1  AGATTACATCCAGGAGATGATTTAGAAAAAGACAAATGGTTTTCATTTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACATCCAGGAGATGATTTAGAAAAAGACAAATGGTTTTCATTTGA  439

seq1  AGAGTGATGAGAGAGGAAAAGTTAAGGGGAGAAAGTCTAGGACTATAGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGATGAGAGAGGAAAAGTTAAGGGGAGAAAGTCTAGGACTATAGAA  489

seq1  GCTACCAGGTAAGAACTGAAGATCCCTTACACAGACGACTTTACCTGTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCAGGTAAGAACTGAAGATCCCTTACACAGACGACTTTACCTGTGT  539

seq1  GACACTCAAGAGCCCAGAATGAACAATAATGGCAGTCACAGAGTGGGAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCAAGAGCCCAGAATGAACAATAATGGCAGTCACAGAGTGGGAAC  589

seq1  TGGGGCAGAAGAAAGAGTAATCTATGAATTATCTGAGTCAGAACATTCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAGAAGAAAGAGTAATCTATGAATTATCTGAGTCAGAACATTCAA  639

seq1  AACTCTTATCATTGCCAACAGGCTTGTCCCCACGTGAGCCCTTTAGTCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTATCATTGCCAACAGGCTTGTCCCCACGTGAGCCCTTTAGTCTT  689

seq1  AAAAGTGTCACAAGATGCCATCAATGTGTGACTTTGAAGGAAATAGGGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTCACAAGATGCCATCAATGTGTGACTTTGAAGGAAATAGGGAA  739

seq1  AACGACTACACAGCGTGGATTTTGTCTACCCTGATTCGGGAAGTGATTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACTACACAGCGTGGATTTTGTCTACCCTGATTCGGGAAGTGATTTT  789

seq1  AAAATGTTAAGTTGCATATAAACATCAATGAAACAACCACATGATTCTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTAAGTTGCATATAAACATCAATGAAACAACCACATGATTCTTA  839

seq1  TATTCTAGCCATAACAAGGCCTCTCTGTACAAGATCTGAGTACAATGGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAGCCATAACAAGGCCTCTCTGTACAAGATCTGAGTACAATGGAA  889

seq1  ATCAATAAAAGATTAGCGCCACTGCTCTTTCTCACCATCTGTCTCCCCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAAAAGATTAGCGCCACTGCTCTTTCTCACCATCTGTCTCCCCAA  939

seq1  GATGAGAGCGAGCCGAAGCATGATAAATGACAATGTGACTTTACCTAAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAGCGAGCCGAAGCATGATAAATGACAATGTGACTTTACCTAAGT  989

seq1  CCCTCATGCCACAGACACAGTGAACTAAGTCAATACAAAAGCGCAAGTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATGCCACAGACACAGTGAACTAAGTCAATACAAAAGCGCAAGTTC  1039

seq1  TGAATACTTAATCGGAATTTAATGTTTCTCTTTGTGAGGAAATAATGGGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACTTAATCGGAATTTAATGTTTCTCTTTGTGAGGAAATAATGGGG  1089

seq1  TTTGTGAATTC  1109
      |||||||||||
seq2  TTTGTGAATTC  1100


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