BAC Information

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BAC

Clone NameB6Ng01-344A01
Chromosome5 (Build37)
Map Location 127,378,016 - 127,506,092
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039178, LOC665760, LOC100040327
Downstream geneTmem132c, Slc15a4, Glt1d1, Tmem132d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344A01.bB6Ng01-344A01.g
ACCGA126620GA126621
length2351,194
definitionB6Ng01-344A01.b B6Ng01-344A01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,378,016 - 127,378,250)(127,504,912 - 127,506,092)
sequence
tgtcacacatctccaaggaagaatgccgctcacacaagcatttcccaaaa
tcaaatttatgctttaggttggagtctattttaattttacatggtaaagc
aaaataatgttccgggcagaaaaacgttactggtatatagcattgatcgt
aaaactaacttttagttgaaagtattaaggttctaaaaaccgctgtccca
ccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

gaattctctggttgctcctgtgtcacacacagcacctggcagatctcatc
ctagctgatctgtccatcattgagtaaagtctgcagcatctgcagcctga
atcaccatgggctacaaggaacacctttggaggcacctcatgctgcacac
agcacttaatatggttgaaaaggataaattcactgatctcttcagtaatc
ttgacagcgatgactgccctcacctctgttctgtgagaaggctgcatggt
ttgggagagctgtccctgagtttgtcaggtgtcactccattcccacagaa
agagccaagtgttgggagtgagaggccttcctttcaaaaggttcagagac
tgcctggcatcaaggtgtaacgatgaaaggatgtaggaaagttatgacag
gattgataacatgccccagggaccacaaggaatagaaacttcagaaggca
gaaaacaaagatggaaaataaattgactgtagatatcaactgattcaaga
ctttctttacaattatgagagaattattaaacgggcatcacacagacctt
aagggctaatggggacctgctagtgcaggtggtccaaatcaagatcatga
ttctggcaaaagaaccggatgccttttcttcttagcaagacaggagatgc
tgaaaggaagcagttagtgtacttatgtctcttaactccctttaaaatga
gatttgttacttttaaaagatttatttatttttattttatctatatgggt
attttgcctgaatttatgcattcatgtgtgcacagtacatacagaggcca
gaagagggcatcagatcccctggaattggagtcacagatggttgtgagct
gctatctgagtggtgagagttaaacccagctcctctacaagagcagccag
ggctctaaaccaccgagccatctctgaagccctgatttatttatttttta
ttttatatgtgcaggtgtctgtgtgtgaatatatgcacaatgcatgcaaa
tgtacatggagccagaagagggcgtggaacctcctggagtcccagtgatg
tgagctgcaacaatggctgcctgggggactgactgagatcttagaaaaga
gcagcaatcacactcttagcccacttgtaccattctcttcaagcctcaat
ctctcaacttccggagagatgaagaattatgttagtccaagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_127378016_127378250
seq2: B6Ng01-344A01.b_49_283

seq1  TGTCACACATCTCCAAGGAAGAATGCCGCTCACACAAGCATTTCCCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACACATCTCCAAGGAAGAATGCCGCTCACACAAGCATTTCCCAAAA  50

seq1  TCAAATTTATGCTTTAGGTTGGAGTCTATTTTAATTTTACATGGTAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTATGCTTTAGGTTGGAGTCTATTTTAATTTTACATGGTAAAGC  100

seq1  AAAATAATGTTCCGGGCAGAAAAACGTTACTGGTATATAGCATTGATCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATGTTCCGGGCAGAAAAACGTTACTGGTATATAGCATTGATCGT  150

seq1  AAAACTAACTTTTAGTTGAAAGTATTAAGGTTCTAAAAACCGCTGTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAACTTTTAGTTGAAAGTATTAAGGTTCTAAAAACCGCTGTCCCA  200

seq1  CCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  235
      |||||||||||||||||||||||||||||||||||
seq2  CCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  235


seq1: chr5_127504912_127506092
seq2: B6Ng01-344A01.g_67_1260 (reverse)

seq1  TGGCTTTGACT-ACATAATCTTTCATCT---CGAAAGTTGAGAGATGGAG  46
      |||||| |||| |||||||  |||||||   || |||||||||||| |||
seq2  TGGCTTGGACTAACATAATTCTTCATCTCTCCGGAAGTTGAGAGATTGAG  50

seq1  GC-TGGAGAG-ATGGTTC-AGT-GGCTAAGA--GTGATTGCTGCTCTTCT  90
      || || |||| ||||| | ||| ||||||||  ||||||||||||||| |
seq2  GCTTGAAGAGAATGGTACAAGTGGGCTAAGAGTGTGATTGCTGCTCTTTT  100

seq1  ---AGATCTCAGTTCAGTCCCC--AGCAGCCATGTTGGCAGCTCACATCC  135
         ||||||||| |||||||||   ||||||||  | |||||||||||| 
seq2  CTAAGATCTCAG-TCAGTCCCCCAGGCAGCCATTGTTGCAGCTCACATC-  148

seq1  ACCTGGGACTCCAGGAGGTCCACCGCCCTCTTCTGGCTCCATGTACATTT  185
        ||||||||||||||||| |  |||||||||||||||||||||||||||
seq2  -ACTGGGACTCCAGGAGGTTCCACGCCCTCTTCTGGCTCCATGTACATTT  197

seq1  GCATGCA-TGTGCATATATTCACACACAGACACCTGCACATATAAAATAA  234
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATTGTGCATATATTCACACACAGACACCTGCACATATAAAATAA  247

seq1  AAATAAAATAAATCAGGGCTTCAGAGATGGCTCGGTGGTTTAGAGCCCTG  284
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATAAATCAGGGCTTCAGAGATGGCTCGGTGGTTTAGAGCCCTG  297

seq1  GCTGCTCTTGTAGAGGAGCTGGGTTTAACTCTCACCACTCAGATAGCAGC  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCTTGTAGAGGAGCTGGGTTTAACTCTCACCACTCAGATAGCAGC  347

seq1  TCACAACCATCTGTGACTCCAATTCCAGGGGATCTGATGCCCTCTTCTGG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCATCTGTGACTCCAATTCCAGGGGATCTGATGCCCTCTTCTGG  397

seq1  CCTCTGTATGTACTGTGCACACATGAATGCATAAATTCAGGCAAAATACC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTATGTACTGTGCACACATGAATGCATAAATTCAGGCAAAATACC  447

seq1  CATATAGATAAAATAAAAATAAATAAATCTTTTAAAAGTAACAAATCTCA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGATAAAATAAAAATAAATAAATCTTTTAAAAGTAACAAATCTCA  497

seq1  TTTTAAAGGGAGTTAAGAGACATAAGTACACTAACTGCTTCCTTTCAGCA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGGGAGTTAAGAGACATAAGTACACTAACTGCTTCCTTTCAGCA  547

seq1  TCTCCTGTCTTGCTAAGAAGAAAAGGCATCCGGTTCTTTTGCCAGAATCA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTCTTGCTAAGAAGAAAAGGCATCCGGTTCTTTTGCCAGAATCA  597

seq1  TGATCTTGATTTGGACCACCTGCACTAGCAGGTCCCCATTAGCCCTTAAG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTGATTTGGACCACCTGCACTAGCAGGTCCCCATTAGCCCTTAAG  647

seq1  GTCTGTGTGATGCCCGTTTAATAATTCTCTCATAATTGTAAAGAAAGTCT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTGATGCCCGTTTAATAATTCTCTCATAATTGTAAAGAAAGTCT  697

seq1  TGAATCAGTTGATATCTACAGTCAATTTATTTTCCATCTTTGTTTTCTGC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAGTTGATATCTACAGTCAATTTATTTTCCATCTTTGTTTTCTGC  747

seq1  CTTCTGAAGTTTCTATTCCTTGTGGTCCCTGGGGCATGTTATCAATCCTG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAAGTTTCTATTCCTTGTGGTCCCTGGGGCATGTTATCAATCCTG  797

seq1  TCATAACTTTCCTACATCCTTTCATCGTTACACCTTGATGCCAGGCAGTC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACTTTCCTACATCCTTTCATCGTTACACCTTGATGCCAGGCAGTC  847

seq1  TCTGAACCTTTTGAAAGGAAGGCCTCTCACTCCCAACACTTGGCTCTTTC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACCTTTTGAAAGGAAGGCCTCTCACTCCCAACACTTGGCTCTTTC  897

seq1  TGTGGGAATGGAGTGACACCTGACAAACTCAGGGACAGCTCTCCCAAACC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAATGGAGTGACACCTGACAAACTCAGGGACAGCTCTCCCAAACC  947

seq1  ATGCAGCCTTCTCACAGAACAGAGGTGAGGGCAGTCATCGCTGTCAAGAT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCCTTCTCACAGAACAGAGGTGAGGGCAGTCATCGCTGTCAAGAT  997

seq1  TACTGAAGAGATCAGTGAATTTATCCTTTTCAACCATATTAAGTGCTGTG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAGAGATCAGTGAATTTATCCTTTTCAACCATATTAAGTGCTGTG  1047

seq1  TGCAGCATGAGGTGCCTCCAAAGGTGTTCCTTGTAGCCCATGGTGATTCA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCATGAGGTGCCTCCAAAGGTGTTCCTTGTAGCCCATGGTGATTCA  1097

seq1  GGCTGCAGATGCTGCAGACTTTACTCAATGATGGACAGATCAGCTAGGAT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAGATGCTGCAGACTTTACTCAATGATGGACAGATCAGCTAGGAT  1147

seq1  GAGATCTGCCAGGTGCTGTGTGTGACACAGGAGCAACCAGAGAATTC  1181
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTGCCAGGTGCTGTGTGTGACACAGGAGCAACCAGAGAATTC  1194


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