BAC Information

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BAC

Clone NameB6Ng01-344H14
Chromosome5 (Build37)
Map Location 20,445,683 - 20,446,822
singlet/doubletsinglet
Overlap geneRsbn1l
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60
Downstream genePtpn12, EG626903, A530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344H14.bB6Ng01-344H14.g
ACCGA126951GA126952
length7621,135
definitionB6Ng01-344H14.b B6Ng01-344H14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctctctaagatttttaacatgaaggggtgttgtattttg
tcaaaggctttttcagcatctaatgagaagatcatgtggcttttttcctt
gagtttgtttatatagtgtattatgttgatggattttcttatattgaacc
atccctgcatctctgggatgaaacctacttgatcatggtgaatgacagtt
ttgatgttgtcttagtcagggtttttattcctgcacaaacatcatgacca
agaagcaagttcagcttacacttccacattgctgttcatcactaaaggaa
gtcaagacttaaactcaagcaggtcaggaggcaggagctgatgcagaggc
catggaggaatgttccttactggcttgctcagcctgctctcttatagaac
caagactaccagcctagagatggcaccacccacaatgggctctccctgcc
ttaatcactaattgagaaaatgccttacagctggatctcctggataactg
ataactccagcagatgtgttcctgcatttggtttttgagaatactgagta
tttatacactgatattcataagtgaggttggtctaacgttctctttcttt
gttggatctttgtgtggtttaggtatcagagtaattgtggcttcatagaa
tgaattaggtagtgtttcttctgttttctatttttatagaatggttgagg
aagtattggtattagttcttctttaaaggtcctggcagaatttctgtact
taaaatcatccc
gaattccaggccagcctggtttacactgtaagttccaggacagccaaagc
aacatagtaagaccctgtttcaaacaacaagaacaaaaagacatgttctg
aatacatagctttggctggcctggaactcagagatccacctgcctctgcc
tctcaagtcctgggattaaaggcgtgtgccaccaagcccaccagatgatg
agattttgaagagatcctctgcttgaagaaaacttggcccctgatgatca
atttaagagcgttcaaaaaagtagcagctaaatatttgatatgctccagc
aggaatgacaggaaccagacagctgctggcctccatggcaacactgatag
tagggctatattctgcagggatatacacgcaagtgtccttgagaggcacc
tctgccaaaaaatgaggactgtgagcttgccacaactaacagccatcacg
ttctcctcggggcagctcagtaataaagcacacttgcagaggacctgggt
tcagtctccagtactccatcatggctcacaaccacccctaactccattgc
catgggttgcaagatgctctgcccatctccactgggaccacttctcttgt
agggctctcctttccatgataaattcaaaggttttagccacagctcaggc
ctctctggcatcaagatgaagctgctgggtgtcttgaacccatcgaggaa
cctaacgaatgacaccagagatacccaagcctaccttctttagcaggact
atttccacaggcacgtggatgccactgggcagcttgtctcagctggaaaa
tccagtccttttccacatgtccgatagccattagcaaacactgcccacac
aagggtgcctgagaagaaaagagccaaagccacagcctccagacagctgg
gccagcctaggactgagacttcgggaactctacctcttcactgcaactca
gctaggagtgtgcacatcaccaaagagaagtcgaggctctgggacatacg
ggtagtgtggagacagcagcagaggcacgaggctgtgcagcagctgtagt
tctggctgtagacaggagatcagccagcagagagagctagctgtgctaag
cagtcaggtgagccccttcatgagccctgaagggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_20445683_20446822
seq2: B6Ng01-344H14.g_65_1199

seq1  GAATTCCAGGCCAGCCTGGTTTACACTGTAAGTTCCAGGACAGCCAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCTGGTTTACACTGTAAGTTCCAGGACAGCCAAAGC  50

seq1  AACATAGTAAGACCCTGTTTCAAACAACAAGAACAAAAAGACATGTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGTAAGACCCTGTTTCAAACAACAAGAACAAAAAGACATGTTCTG  100

seq1  AATACATAGCTTTGGCTGGCCTGGAACTCAGAGATCCACCTGCCTCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAGCTTTGGCTGGCCTGGAACTCAGAGATCCACCTGCCTCTGCC  150

seq1  TCTCAAGTCCTGGGATTAAAGGCGTGTGCCACCAAGCCCACCAGATGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGTCCTGGGATTAAAGGCGTGTGCCACCAAGCCCACCAGATGATG  200

seq1  AGATTTTGAAGAGATCCTCTGCTTGAAGAAAACTTGGCCCCTGATGATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGAAGAGATCCTCTGCTTGAAGAAAACTTGGCCCCTGATGATCA  250

seq1  ATTTAAGAGCGTTCAAAAAAGTAGCAGCTAAATATTTGATATGCTCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGAGCGTTCAAAAAAGTAGCAGCTAAATATTTGATATGCTCCAGC  300

seq1  AGGAATGACAGGAACCAGACAGCTGCTGGCCTCCATGGCAACACTGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGACAGGAACCAGACAGCTGCTGGCCTCCATGGCAACACTGATAG  350

seq1  TAGGGCTATATTCTGCAGGGATATACACGCAAGTGTCCTTGAGAGGCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTATATTCTGCAGGGATATACACGCAAGTGTCCTTGAGAGGCACC  400

seq1  TCTGCCAAAAAATGAGGACTGTGAGCTTGCCACAACTAACAGCCATCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAAAAAATGAGGACTGTGAGCTTGCCACAACTAACAGCCATCACG  450

seq1  TTCTCCTCGGGGCAGCTCAGTAATAAAGCACACTTGCAGAGGACCTGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCGGGGCAGCTCAGTAATAAAGCACACTTGCAGAGGACCTGGGT  500

seq1  TCAGTCTCCAGTACTCCATCATGGCTCACAACCACCCCTAACTCCATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCCAGTACTCCATCATGGCTCACAACCACCCCTAACTCCATTGC  550

seq1  CATGGGTTGCAAGATGCTCTGCCCATCTCCACTGGGACCACTTCTCTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTTGCAAGATGCTCTGCCCATCTCCACTGGGACCACTTCTCTTGT  600

seq1  AGGGCTCTCCTTTCCATGATAAATTCAAAGGTTTTAGCCACAGCTCAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCTCCTTTCCATGATAAATTCAAAGGTTTTAGCCACAGCTCAGGC  650

seq1  CTCTCTGGCATCAAGATGAAGCTGCTGGGTGTCTTGAACCCATCGAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGCATCAAGATGAAGCTGCTGGGTGTCTTGAACCCATCGAGGAA  700

seq1  CCTAACGAATGACACCAGAGATACCCAAGCCTACCTTCTTTAGCAGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACGAATGACACCAGAGATACCCAAGCCTACCTTCTTTAGCAGGACT  750

seq1  ATTTCCACAGGCACGTGGATGCCACTGGGCAGCTTGTCTCAGCTGGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCACAGGCACGTGGATGCCACTGGGCAGCTTGTCTCAGCTGGAAAA  800

seq1  TCCAGTCCTTTTCCACATGTCCGATAGCCATTAGCAAACACTGCCCACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCCTTTTCCACATGTCCGATAGCCATTAGCAAACACTGCCCACAC  850

seq1  AAGGGTGCCTGAGAAGAAAAGAGCCAAAGCCACAGCCTCCAGACAGCT-G  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGGGTGCCTGAGAAGAAAAGAGCCAAAGCCACAGCCTCCAGACAGCTGG  900

seq1  GCCAGCCTAGGACTGAGACTTCGGGAACTCTACCTCTTCACTGCAACCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCCAGCCTAGGACTGAGACTTCGGGAACTCTACCTCTTCACTGCAACTCA  950

seq1  GCTAGGAGTGTGCACATCACCAAAGAGAAGTCGAGGCTCTGGGACATACG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAGTGTGCACATCACCAAAGAGAAGTCGAGGCTCTGGGACATACG  1000

seq1  GGTAGTGTGGAGACAAGCAGCAGGAGGCACGAGGCTGTGCCAGCAGCTGT  1049
      |||||||||||||| ||||||| |||||||||||||||| ||||||||||
seq2  GGTAGTGTGGAGAC-AGCAGCA-GAGGCACGAGGCTGTG-CAGCAGCTGT  1047

seq1  AGTTCTGGCTGTAGACAGGAGATCAAGCCAGCAGAGAGAGCTAAGCTGTG  1099
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  AGTTCTGGCTGTAGACAGGAGATC-AGCCAGCAGAGAGAGCT-AGCTGTG  1095

seq1  CTTAAAGCAGTCAGGTGAGCCCC-TCATGGAGCCCTG-AGGGC  1140
      ||  ||||||||||||||||||| |||| |||||||| |||||
seq2  CT--AAGCAGTCAGGTGAGCCCCTTCAT-GAGCCCTGAAGGGC  1135