BAC Information

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BAC

Clone NameB6Ng01-346C09
Chromosome5 (Build37)
Map Location 86,171,797 - 86,172,931
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346C09.bB6Ng01-346C09.g
ACCGA128130GA128131
length1,1341,224
definitionB6Ng01-346C09.b B6Ng01-346C09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccctacataaatatttccagagtaaattgtttaagtcagtaaa
tgtagaataaatttctaaagtattcctttttgaactgtgtcccccaaatc
ttctaattagcatggttttctcctataccacctgcctcaaattattttaa
tgacttttacatttagttacctgtaaatgaatcttaataataatgaaaaa
tcaatatatcctttcctatgtgttagcttcacaactgatgaacttttttg
catctatgagttttctttaagactgtctataaatacataaggaaagaaca
aaagacagacatagagggaaacaatggaatggggtatacccattaacagt
taaaattccaagaggaacttcaaaaatccaccattattggagcatacagc
atggagggtaaatacttaacatgtgcctagatacaggagaaagcaaattg
aacttgggtaaacctaatcttctaagaattttttttaaaaatcatgtatt
tctctattgaataattaattagccatatttgtattcagaaatttgtggaa
aagataatatgtattgggatgccaactttaaaactgttagtaagggtcag
aagacatggattagctctgccttctatcaacaaaatggttctggtttggt
aactgtagatatcactacatataaaatctctgtcacagcaaacctgagct
cattccttccttctgcaaaattttgcatcaaggattttagtaactagagt
aagttcaagaaacataaaacatgccacctaagtgtccctttgcctatagc
ctgtcctgtcctgaacatcatcgtcacaataatcaccagttttatctgtc
atgctgcaacatttaagatatgtgtcttttctgaccctcacaaggttgta
acttctttcaaggaagtatccaacctctttcatccatggatttacttaaa
caaagcaagaagcatacacagcagtgtccaaaattctcattttaaatcag
taaggaaatgcatagactcatagatgtataaaatctttagatgacagatc
atctgctgtcttgttaccaactacatccatgggaaatgccttcaacactg
gctcctcctctttgttattgctggcattaggaaa

gaattcttatttcctatgtattttcattacctaatataatggataatttt
atgtgttaacttgatcagaaaatggaatttctgaaatattttattcaaca
ctactttatgggttgcagtatgatatgtgacagtgcttctaataaaaaac
agaactttgagtctatgtgctgaatgaataaaatggccatccccagggtg
tgtgggtacctttctgtcctagaaggtcagaaagaatgaattgtagaggg
aggaaggccttgtcccacacatgactcccgactccaggagcaaagccatt
gtattcttctcatattttgtgtttttgagtgtccagacttctgtgttctt
gagtctccagacttttggcatagctcgcaacatacaccttggattcaatt
tttctcaggccttcaaactctaccatacctcattaacagttgagtcattg
cttgtgccctaagtaatactaagtattatttatctaaataaaatgttctc
taattttcaaactttgttatcttaccaaaaataaaaagcatctgactaaa
atttcaggatcagatgggtttacaacagtgttcaatcagactttcaaaga
agatctgtagctaattctccttaaattattttaaaatatagaaatatagg
gattacttctgaactcctatgaagccaatattgctctaatatctaaacca
gttaaatatatagcaaaagaagaaataggtttaaaatccacaatgaaata
cttacaaatcaatatagacatatatgaaaaggaatatacactatgaacac
attgcctttatcccagagatgcagggatggttcaacatatactaatcaat
aaataagataaattgcacaaatgggaattaaagacaaaaatcacatgata
caatatatagtaaaattcgtgacaacatccaacatgccttcaagataaaa
atcctagatatagtagtactagagggaacatatttcaaggtaataaatgt
atctatgagaaatcagcagccatatgtctagaaaaaacatgttctaggga
aagtttggaaattatcccactggaaccagaaaggtatacagatgtcactc
tctatcagtctcaaatattgtgctcaagcactactgagacataggcagga
aaggcagtaatggataccacacacacgcagaagaaaaagtccaacatatt
cccttatttttccgaagagtgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86171797_86172931
seq2: B6Ng01-346C09.b_46_1179

seq1  GAATTCTCCCTACATAAATATTTCCAGAGTAAATTGTTTAAGTCAGTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTACATAAATATTTCCAGAGTAAATTGTTTAAGTCAGTAAA  50

seq1  TGTAGAATAAATTTCTAAAGTATTCCTTTTTGAACTGTGTCCCCCAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAATAAATTTCTAAAGTATTCCTTTTTGAACTGTGTCCCCCAAATC  100

seq1  TTCTAATTAGCATGGTTTTCTCCTATACCACCTGCCTCAAATTATTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTAGCATGGTTTTCTCCTATACCACCTGCCTCAAATTATTTTAA  150

seq1  TGACTTTTACATTTAGTTACCTGTAAATGAATCTTAATAATAATGAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTACATTTAGTTACCTGTAAATGAATCTTAATAATAATGAAAAA  200

seq1  TCAATATATCCTTTCCTATGTGTTAGCTTCACAACTGATGAACTTTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATATCCTTTCCTATGTGTTAGCTTCACAACTGATGAACTTTTTTG  250

seq1  CATCTATGAGTTTTCTTTAAGACTGTCTATAAATACATAAGGAAAGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATGAGTTTTCTTTAAGACTGTCTATAAATACATAAGGAAAGAACA  300

seq1  AAAGACAGACATAGAGGGAAACAATGGAATGGGGTATACCCATTAACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGACATAGAGGGAAACAATGGAATGGGGTATACCCATTAACAGT  350

seq1  TAAAATTCCAAGAGGAACTTCAAAAATCCACCATTATTGGAGCATACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCCAAGAGGAACTTCAAAAATCCACCATTATTGGAGCATACAGC  400

seq1  ATGGAGGGTAAATACTTAACATGTGCCTAGATACAGGAGAAAGCAAATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGGTAAATACTTAACATGTGCCTAGATACAGGAGAAAGCAAATTG  450

seq1  AACTTGGGTAAACCTAATCTTCTAAGAATTTTTTTTAAAAATCATGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGGTAAACCTAATCTTCTAAGAATTTTTTTTAAAAATCATGTATT  500

seq1  TCTCTATTGAATAATTAATTAGCCATATTTGTATTCAGAAATTTGTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTGAATAATTAATTAGCCATATTTGTATTCAGAAATTTGTGGAA  550

seq1  AAGATAATATGTATTGGGATGCCAACTTTAAAACTGTTAGTAAGGGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATATGTATTGGGATGCCAACTTTAAAACTGTTAGTAAGGGTCAG  600

seq1  AAGACATGGATTAGCTCTGCCTTCTATCAACAAAATGGTTCTGGTTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGGATTAGCTCTGCCTTCTATCAACAAAATGGTTCTGGTTTGGT  650

seq1  AACTGTAGATATCACTACATATAAAATCTCTGTCACAGCAAACCTGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAGATATCACTACATATAAAATCTCTGTCACAGCAAACCTGAGCT  700

seq1  CATTCCTTCCTTCTGCAAAATTTTGCATCAAGGATTTTAGTAACTAGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTCCTTCTGCAAAATTTTGCATCAAGGATTTTAGTAACTAGAGT  750

seq1  AAGTTCAAGAAACATAAAACATGCCACCTAAGTGTCCCTTTGCCTATAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAAGAAACATAAAACATGCCACCTAAGTGTCCCTTTGCCTATAGC  800

seq1  CTGTCCTGTCCTGAACATCATCGTCACAATAATCACCAGTTTTATCTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGTCCTGAACATCATCGTCACAATAATCACCAGTTTTATCTGTC  850

seq1  ATGCTGCAACATTTAAGATATGTGTCTTTTCTGACCCTCACAAGGTTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCAACATTTAAGATATGTGTCTTTTCTGACCCTCACAAGGTTGTA  900

seq1  ACTTCTTTCAAGGAAGTATCCAACCTCTTTCATCCATGGATTTACTTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTCAAGGAAGTATCCAACCTCTTTCATCCATGGATTTACTTAAA  950

seq1  CAAAGCAAGAAGCATACACAGCAGGTGTCCAAAATTCTCATTTTAAATCA  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAAAGCAAGAAGCATACACAGCA-GTGTCCAAAATTCTCATTTTAAATCA  999

seq1  GTAAGGAAATGCATAGACTCATAGATGTATAAAATC-TTAGATGACAAGA  1049
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  GTAAGGAAATGCATAGACTCATAGATGTATAAAATCTTTAGATGAC-AGA  1048

seq1  TCATCTTGCTTGTCTTGTTACCAACTACATCCATGGGAAATGCCTTCAAA  1099
      ||||| ||| ||||||||||||||||||||||||||||||||||||||| 
seq2  TCATC-TGC-TGTCTTGTTACCAACTACATCCATGGGAAATGCCTTCAA-  1095

seq1  CAACTGGCT----CTCTCTTGTATTGCTGGCATTAAGAAA  1135
        |||||||    |||| |  |||||||||||||| ||||
seq2  -CACTGGCTCCTCCTCTTTGTTATTGCTGGCATTAGGAAA  1134


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