BAC Information

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BAC

Clone NameB6Ng01-346E07
Chromosome5 (Build37)
Map Location 82,030,488 - 82,147,153
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346E07.bB6Ng01-346E07.g
ACCGA128212GA128213
length1,1441,149
definitionB6Ng01-346E07.b B6Ng01-346E07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,146,004 - 82,147,153)(82,030,488 - 82,031,639)
sequence
gaattccaaaaaactctattttctgataaatgtagtttggagtctcctaa
gttcctggaatgtctctacattttgggaaacaagtcagcaagcacgaagg
tcacctcacaggcttatgggagacaaagggctcagtggtctgaagcaatg
gtttcttctgtagaataagatgaaactcacagttgagcagtctagtgaga
agggcgataggatagtctttcctacttctttatagcaaattaagcaacta
agttcactccagacttttatatttgtatcaaatacaaatcaacattaaca
tatttaagctttaatctcaaaagagaaacactagcaagttagatgctaga
gagagacattcacaaagagctgcattttagataaaaaaaaacccaacaat
ttctttttaccttaaagaaatataacttgatgctttcatatatttgaaat
tatattacagtgaattaaagaaaaaaaagtaaaattcatcgtattctgaa
ctagaatcacagctaccataacaaaggaaaaagagaaaagaaaatacttt
attaaatgagaaggaaatactacatttctctcactgctgctttactggtg
tataagagaggattcatagcagagtaatcagcttcccttcttgctcagca
ctgtctgagttcttatcatcatattttgcatcctgataaaatctttatca
gatcatagtctcagatttcagaaatgagggcagaagtttgaaatgtataa
aaatcatcccaatagcccagaagataagtgaggctcagtgccatctcaga
gttaagtagatgaagcattagtcttttgttagagactctggttagttttg
ctctgataattggttccggtgacgctgaccaaagtttgtaatcccaggtc
atgccatctgcatcattctggggaagtaacgtcagagggcaaacgtagta
agtggtgagcctgagttcagccttgcctttactatgatcagtcactgcgc
tttgtgtcagaccgaactgtttagcttacctttgagaaatattatgagtg
tctttttttttctacagctccattatggaaatagtgatcaaattatcaaa
gcttcaaatgactgaatgataaagagactaggacttgctacttt

gaattccaatctgaactctccaagactagattaacaagcactaccttttc
tgattgcctcaagaaattaatagggttttttacaaacattaagtcatagg
taaaatatgtaagctaatatgcattaaagccttttacctgacaggcctgg
atttcgtcacaatttaatatgccgaggattatgagaggagcagactccgg
aaatgtattttagaggttcttatgctgcagctttttcagtggttaagagg
agagaaaaacatttgcattgttagcaagcatctctgaaaaagtagataat
cacgtcccatttattcctctgatcctgccttagcaccgtttttactgata
tttcatagtcaatgatacttattaagcacgtatatatccaccagtattat
atgtgtgctttaaattactgcactcttatatccttatgaataaggaagag
gttgaatgtcattcaacaggcagcatttcttctatttctcagtaactgaa
acttcatcaaaattatgacgtcaactagtgaattaatggaaatgctgcat
cgtaaaatccttaacatttatttcctgctttttagtgtttcacatggttg
ctaaaagatcattggaaataaacagaaagacctaaaagagtctgaactag
catctgctgtacacatggtgtataatattaactaataaattaatttctct
aatgagaatgtcacaacgcttaatgtaattgaaattaattcataagattt
atcttctcttgttatttactctacaaaagaaatgaaatacattggtgaat
catgcctgataggcttgttattgttgtttaggcatgggcttgctctgtag
cccaggttgacctgcaactcacagcactcattttgcctcagtgtccagaa
tgctgtgattacaggcgtgtgccgccatactcggcttactttgtattatt
tattcagtcctagtctccaatgctagtgacctaatgtgcagagctagttc
ggcttgccccaaggctatcatgacattaaatcatgtgcccatatgatagt
ttggtactagcaaagcatctccaaatgcatggacagggtagaagaacgaa
ccaaattatacaaaattaaatatacaatctagacttaattttattattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82146004_82147153
seq2: B6Ng01-346E07.b_42_1185 (reverse)

seq1  AAAGTAGCAAGTCTTAAGTCTCCTTTTATCATCCAGTCATTTG-AGCTTT  49
      ||||||||||||| | ||||||  |||||||| |||||||||| ||||||
seq2  AAAGTAGCAAGTCCT-AGTCTC--TTTATCATTCAGTCATTTGAAGCTTT  47

seq1  GATAATTTGATCACTTATTTTCATAATGGAGCTGTAGGAAAAAAAAGACA  99
      |||||||||||||| ||||| |||||||||||||||| ||||||||||||
seq2  GATAATTTGATCAC-TATTTCCATAATGGAGCTGTAGAAAAAAAAAGACA  96

seq1  CTCATAATA-TTCTCAAAGGTAAGCTAAAACAGTTCGGTTCTGACACAAA  148
      ||||||||| |||||||||||||||| ||||||||||| |||||||||||
seq2  CTCATAATATTTCTCAAAGGTAAGCT-AAACAGTTCGG-TCTGACACAAA  144

seq1  GCGCAGTGACTGATTCATAAGTAAAGGCAAGGCTGAACTCAGGCTCACCA  198
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  GCGCAGTGACTGA-TCAT-AGTAAAGGCAAGGCTGAACTCAGGCTCACCA  192

seq1  CTTACTACGTTTGCCCTCTGACGTTACTTCCCCAGAATGATGCAGATGGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTACGTTTGCCCTCTGACGTTACTTCCCCAGAATGATGCAGATGGC  242

seq1  ATGACCTGGGATTACAAACTTTGGTCAGCGTCACCGGAACCAATTATCAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTGGGATTACAAACTTTGGTCAGCGTCACCGGAACCAATTATCAG  292

seq1  AGCAAAACTAACCAGAGTCTCTAACAAAAGACTAATGCTTCATCTACTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACTAACCAGAGTCTCTAACAAAAGACTAATGCTTCATCTACTTA  342

seq1  ACTCTGAGATGGCACTGAGCCTCACTTATCTTCTGGGCTATTGGGATGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGATGGCACTGAGCCTCACTTATCTTCTGGGCTATTGGGATGAT  392

seq1  TTTTATACATTTCAAACTTCTGCCCTCATTTCTGAAATCTGAGACTATGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACATTTCAAACTTCTGCCCTCATTTCTGAAATCTGAGACTATGA  442

seq1  TCTGATAAAGATTTTATCAGGATGCAAAATATGATGATAAGAACTCAGAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAAAGATTTTATCAGGATGCAAAATATGATGATAAGAACTCAGAC  492

seq1  AGTGCTGAGCAAGAAGGGAAGCTGATTACTCTGCTATGAATCCTCTCTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGAGCAAGAAGGGAAGCTGATTACTCTGCTATGAATCCTCTCTTA  542

seq1  TACACCAGTAAAGCAGCAGTGAGAGAAATGTAGTATTTCCTTCTCATTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAGTAAAGCAGCAGTGAGAGAAATGTAGTATTTCCTTCTCATTTA  592

seq1  ATAAAGTATTTTCTTTTCTCTTTTTCCTTTGTTATGGTAGCTGTGATTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTATTTTCTTTTCTCTTTTTCCTTTGTTATGGTAGCTGTGATTCT  642

seq1  AGTTCAGAATACGATGAATTTTACTTTTTTTTCTTTAATTCACTGTAATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGAATACGATGAATTTTACTTTTTTTTCTTTAATTCACTGTAATA  692

seq1  TAATTTCAAATATATGAAAGCATCAAGTTATATTTCTTTAAGGTAAAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCAAATATATGAAAGCATCAAGTTATATTTCTTTAAGGTAAAAAG  742

seq1  AAATTGTTGGGTTTTTTTTTATCTAAAATGCAGCTCTTTGTGAATGTCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTGGGTTTTTTTTTATCTAAAATGCAGCTCTTTGTGAATGTCTC  792

seq1  TCTCTAGCATCTAACTTGCTAGTGTTTCTCTTTTGAGATTAAAGCTTAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGCATCTAACTTGCTAGTGTTTCTCTTTTGAGATTAAAGCTTAAA  842

seq1  TATGTTAATGTTGATTTGTATTTGATACAAATATAAAAGTCTGGAGTGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAATGTTGATTTGTATTTGATACAAATATAAAAGTCTGGAGTGAA  892

seq1  CTTAGTTGCTTAATTTGCTATAAAGAAGTAGGAAAGACTATCCTATCGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTGCTTAATTTGCTATAAAGAAGTAGGAAAGACTATCCTATCGCC  942

seq1  CTTCTCACTAGACTGCTCAACTGTGAGTTTCATCTTATTCTACAGAAGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCACTAGACTGCTCAACTGTGAGTTTCATCTTATTCTACAGAAGAA  992

seq1  ACCATTGCTTCAGACCACTGAGCCCTTTGTCTCCCATAAGCCTGTGAGGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGCTTCAGACCACTGAGCCCTTTGTCTCCCATAAGCCTGTGAGGT  1042

seq1  GACCTTCGTGCTTGCTGACTTGTTTCCCAAAATGTAGAGACATTCCAGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCGTGCTTGCTGACTTGTTTCCCAAAATGTAGAGACATTCCAGGA  1092

seq1  ACTTAGGAGACTCCAAACTACATTTATCAGAAAATAGAGTTTTTTGGAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGAGACTCCAAACTACATTTATCAGAAAATAGAGTTTTTTGGAAT  1142

seq1  TC  1150
      ||
seq2  TC  1144


seq1: chr5_82030488_82031639
seq2: B6Ng01-346E07.g_65_1213

seq1  GAATTCCAATCTGAACTCTCCAAGACTAGATTAACAAGCACTACCTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCTGAACTCTCCAAGACTAGATTAACAAGCACTACCTTTTC  50

seq1  TGATTGCCTCAAGAAATTAATAGGGTTTTTTACAAACATTAAGTCATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCCTCAAGAAATTAATAGGGTTTTTTACAAACATTAAGTCATAGG  100

seq1  TAAAATATGTAAGCTAATATGCATTAAAGCCTTTTACCTGACAGGCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATGTAAGCTAATATGCATTAAAGCCTTTTACCTGACAGGCCTGG  150

seq1  ATTTCGTCACAATTTAATATGCCGAGGATTATGAGAGGAGCAGACTCCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGTCACAATTTAATATGCCGAGGATTATGAGAGGAGCAGACTCCGG  200

seq1  AAATGTATTTTAGAGGTTCTTATGCTGCAGCTTTTTCAGTGGTTAAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATTTTAGAGGTTCTTATGCTGCAGCTTTTTCAGTGGTTAAGAGG  250

seq1  AGAGAAAAACATTTGCATTGTTAGCAAGCATCTCTGAAAAAGTAGATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAACATTTGCATTGTTAGCAAGCATCTCTGAAAAAGTAGATAAT  300

seq1  CACGTCCCATTTATTCCTCTGATCCTGCCTTAGCACCGTTTTTACTGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCCCATTTATTCCTCTGATCCTGCCTTAGCACCGTTTTTACTGATA  350

seq1  TTTCATAGTCAATGATACTTATTAAGCACGTATATATCCACCAGTATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGTCAATGATACTTATTAAGCACGTATATATCCACCAGTATTAT  400

seq1  ATGTGTGCTTTAAATTACTGCACTCTTATATCCTTATGAATAAGGAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCTTTAAATTACTGCACTCTTATATCCTTATGAATAAGGAAGAG  450

seq1  GTTGAATGTCATTCAACAGGCAGCATTTCTTCTATTTCTCAGTAACTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATGTCATTCAACAGGCAGCATTTCTTCTATTTCTCAGTAACTGAA  500

seq1  ACTTCATCAAAATTATGACGTCAACTAGTGAATTAATGGAAATGCTGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATCAAAATTATGACGTCAACTAGTGAATTAATGGAAATGCTGCAT  550

seq1  CGTAAAATCCTTAACATTTATTTCCTGCTTTTTAGTGTTTCACATGGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAAATCCTTAACATTTATTTCCTGCTTTTTAGTGTTTCACATGGTTG  600

seq1  CTAAAAGATCATTGGAAATAAACAGAAAGACCTAAAAGAGTCTGAACTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGATCATTGGAAATAAACAGAAAGACCTAAAAGAGTCTGAACTAG  650

seq1  CATCTGCTGTACACATGGTGTATAATATTAACTAATAAATTAATTTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTGTACACATGGTGTATAATATTAACTAATAAATTAATTTCTCT  700

seq1  AATGAGAATGTCACAACGCTTAATGTAATTGAAATTAATTCATAAGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAATGTCACAACGCTTAATGTAATTGAAATTAATTCATAAGATTT  750

seq1  ATCTTCTCTTGTTATTTACTCTACAAAAGAAATGAAATACATTGGTGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTCTTGTTATTTACTCTACAAAAGAAATGAAATACATTGGTGAAT  800

seq1  CATGCCTGATAGGCTTGTTATTGTTGTTTAGGCATGGGCTTGCTCTGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGATAGGCTTGTTATTGTTGTTTAGGCATGGGCTTGCTCTGTAG  850

seq1  CCCAGGTTGACCTGCAACTCACAGCACTCATTTTGCCTCAGTGTCCAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTTGACCTGCAACTCACAGCACTCATTTTGCCTCAGTGTCCAGAA  900

seq1  TGCTGTGATTACAGGCGTGTGCCGCCATACTCGGCTTACTTTGTATTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGATTACAGGCGTGTGCCGCCATACTCGGCTTACTTTGTATTATT  950

seq1  TATTCAGTCCTAGTCTCCAATGCTAGTGACCTAATGTGCAGAGCTAGTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGTCCTAGTCTCCAATGCTAGTGACCTAATGTGCAGAGCTAGTTC  1000

seq1  GGCTTGCCCCAAGGCTATCATGACAATTAAAATCATGTGCCCATATGATA  1050
      |||||||||||||||||||||||||  | |||||||||||||||||||||
seq2  GGCTTGCCCCAAGGCTATCATGACA--TTAAATCATGTGCCCATATGATA  1048

seq1  GTTTGGTACTAGCAAAGCATCTCCAAATGCATGGACAAGGGTAGA--GAC  1098
      |||||||||||||||||||||||||||||||||||| ||||||||   ||
seq2  GTTTGGTACTAGCAAAGCATCTCCAAATGCATGGAC-AGGGTAGAAGAAC  1097

seq1  AGACCAAATTTATTACAAAATTAAATATACAAATCTAGACTT-ATATTTT  1147
        ||||||||   ||||||||||||||||| ||||||||||| || || |
seq2  GAACCAAATT--ATACAAAATTAAATATAC-AATCTAGACTTAATTTTAT  1144

seq1  TATTT  1152
      |||||
seq2  TATTT  1149


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