BAC Information

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BAC

Clone NameB6Ng01-348C05
Chromosome5 (Build37)
Map Location 56,470,946 - 56,576,193
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335, LOC100041349
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348C05.bB6Ng01-348C05.g
ACCGA129522GA129523
length1,1391,046
definitionB6Ng01-348C05.b B6Ng01-348C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,470,946 - 56,472,091)(56,575,158 - 56,576,193)
sequence
gaattctgaggacaactacttaagtgtgtgtgtgtgtgtgtgtgtgtgtg
tctctgtgtgtgtgtgtgtgtgtgtgtgtgtattgtgtatggatgtgtat
gcgtgtgtgtatagtacatgaatatacaggcatatgtgtttgcacacatg
tatcataacgtttatctggaaggccaaaagcagcttgtgtgtgcattttg
cctttcactagcatgtgttgttaagacgttgtactaaggtgtcaggtcac
catacttggaagaagtcttattttattgttgttgttttgtttttaacata
ctgagcaattttgcttccagagctcattgatgtgttagtctttatttaaa
ataggagaattagttagaaaaattaagaatattctataactggcttgcaa
agaaagagaacgtaatgaagaaagttaaagagcacctcctagaagacaga
gattggttgcaaaacttatggtagaatcacacggttctgctagttctata
tgcccctacgggtcattactacactgagacagtgaaaaaatcacacagtt
aaaggttaccaacaagacttttgttacttttgtcactgtgaaataaactc
ttcttgttctctttgcccgagagtcttctatgtttctcagtgctccagtt
ctgccagtgagaatatccctagaaattgtgtttgattctcagcagtatag
aaggctaacattattatttctcactccaatttttgtatgagcacttcagc
gaagaaacaattctactagaaatagtttaaatatgtttttacaaaccctg
atagtcttgcaggtaaactctgcctttcacacgtacaatcacaaaaccag
tagaattagaaattttctttataaatctgtcttaaagaaagaaaatcaaa
ccattagtttacggaacaacaacattattcattttgagcaatagaaacat
ccaaaatgtttctgggttttttatgtcaaatgaaatattcattttttatg
taatggtccagtcaatgggtaatgctgtgagaacacgcaacccagcagaa
gcattgagtgacttatcttgcatttaaagatgataaagttgttcagtttc
agtatgcataaatttattagttagagaaaattttgctct
gaattccctgtacctgacactctccaagaaatcctctctctataccagaa
ctttcaccttcctacttctttcctatgctcatagatcaagagcattttat
tgacaagtgaagttttcaaacattgcacaaaagattccctctacacatct
ggcagagagaaaaagtagtacactggacatgcccaggaccagggagtcaa
gagaaaacaatgaagatagaagaaatagaaaatataatgatagggaatag
atattgagtataacaagtgaagaatggaatcatgggttatcaggaggatg
agtagttagaagggaagtccataaacaaaaacaggccttggagaatgggg
tggatgtgtagagacatgagatgcatacgaagtacttgtgagtagggact
gaggaatcctgaagcctgcatgggatttgatatacaaccagaggtgcatg
tctgtggaggaccatatgaccctcctgccagagaaaagggatatagattc
tattgcacatggataatccatttcaaaagttgtgcagaaatgttttttat
ccaaccacaagaaaattgtctgttgtctagcttgaactcatttctaggca
tattgactagctgagagcaagcagtagcttttgagaacctcactgcaggg
catttctgctatgatatactctgcttagcatcaatgcctttttccccctc
aagcaaaggtacaagatttcatgataccataactctcactttgcatacat
gaataaccatcaccatacaagcaatgtcaagttttcctgtctttcttcga
tctatctggctttaagattagctccagttgttttgaagcctacatgaaga
ctgagcttcacatatgtactatgtatgtgctctttggttagtgggtttag
gctttgagagcctaggttagtaaactgttgatcttccctatagagttcct
agcccatccacggccccttatttccttcccctgtctctttcataagagtc
ctcctgaatatccatctaatgattggcctggtggatcctctgtatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_56470946_56472091
seq2: B6Ng01-348C05.b_45_1183

seq1  GAATTCTGAGGACAACTACTTAAGTGTGTGTGTGTGTGTGTGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGGACAACTACTTAAGTGTGTGTGTGTGTGTGTGTGTGTGTG  50

seq1  TCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTATTGTGTATGGATGTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTATTGTGTATGGATGTGTAT  100

seq1  GCGTGTGTGTATAGTACATGAATATACAGGCATATGTGTTTGCACACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTGTGTATAGTACATGAATATACAGGCATATGTGTTTGCACACATG  150

seq1  TATCATAACGTTTATCTGGAAGGCCAAAAGCAGCTTGTGTGTGCATTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAACGTTTATCTGGAAGGCCAAAAGCAGCTTGTGTGTGCATTTTG  200

seq1  CCTTTCACTAGCATGTGTTGTTAAGACGTTGTACTAAGGTGTCAGGTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACTAGCATGTGTTGTTAAGACGTTGTACTAAGGTGTCAGGTCAC  250

seq1  CATACTTGGAAGAAGTCTTATTTTATTGTTGTTGTTTTGTTTTTAACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTGGAAGAAGTCTTATTTTATTGTTGTTGTTTTGTTTTTAACATA  300

seq1  CTGAGCAATTTTGCTTCCAGAGCTCATTGATGTGTTAGTCTTTATTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAATTTTGCTTCCAGAGCTCATTGATGTGTTAGTCTTTATTTAAA  350

seq1  ATAGGAGAATTAGTTAGAAAAATTAAGAATATTCTATAACTGGCTTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGAATTAGTTAGAAAAATTAAGAATATTCTATAACTGGCTTGCAA  400

seq1  AGAAAGAGAACGTAATGAAGAAAGTTAAAGAGCACCTCCTAGAAGACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAACGTAATGAAGAAAGTTAAAGAGCACCTCCTAGAAGACAGA  450

seq1  GATTGGTTGCAAAACTTATGGTAGAATCACACGGTTCTGCTAGTTCTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTTGCAAAACTTATGGTAGAATCACACGGTTCTGCTAGTTCTATA  500

seq1  TGCCCCTACGGGTCATTACTACACTGAGACAGTGAAAAAATCACACAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTACGGGTCATTACTACACTGAGACAGTGAAAAAATCACACAGTT  550

seq1  AAAGGTTACCAACAAGACTTTTGTTACTTTTGTCACTGTGAAATAAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTACCAACAAGACTTTTGTTACTTTTGTCACTGTGAAATAAACTC  600

seq1  TTCTTGTTCTCTTTGCCCGAGAGTCTTCTATGTTTCTCAGTGCTCCAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTCTCTTTGCCCGAGAGTCTTCTATGTTTCTCAGTGCTCCAGTT  650

seq1  CTGCCAGTGAGAATATCCCTAGAAATTGTGTTTGATTCTCAGCAGTATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGTGAGAATATCCCTAGAAATTGTGTTTGATTCTCAGCAGTATAG  700

seq1  AAGGCTAACATTATTATTTCTCACTCCAATTTTTGTATGAGCACTTCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAACATTATTATTTCTCACTCCAATTTTTGTATGAGCACTTCAGC  750

seq1  GAAGAAACAATTCTACTAGAAATAGTTTAAATATGTTTTTACAAACCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACAATTCTACTAGAAATAGTTTAAATATGTTTTTACAAACCCTG  800

seq1  ATAGTCTTGCAGGTTAAACTCTGCCTTTCACACGTACAATCACAAAACCA  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTGCAGG-TAAACTCTGCCTTTCACACGTACAATCACAAAACCA  849

seq1  GTAGAATTAGAAAATTTTCTTTATAAATCTGTCTTAAAGAAAGAAAATCA  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATTAG-AAATTTTCTTTATAAATCTGTCTTAAAGAAAGAAAATCA  898

seq1  AAACCATAGTTTACGGAACAACAACATTATTCATTTTGAGCAATAGAAAC  950
      || |  ||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTAGTTTACGGAACAACAACATTATTCATTTTGAGCAATAGAAAC  948

seq1  ATCCAAAAATGTTTCTGGGTTTTTTATTGTCAAAATGAAATATTCA-TTT  999
      |||| ||||||||||||||||||||| |||| |||||||||||||| |||
seq2  ATCC-AAAATGTTTCTGGGTTTTTTA-TGTC-AAATGAAATATTCATTTT  995

seq1  TTATGTAATGGTCCAGTCAATGGGTAATGCTGTGAG-ACACGC-ACCCAG  1047
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  TTATGTAATGGTCCAGTCAATGGGTAATGCTGTGAGAACACGCAACCCAG  1045

seq1  CAGAAGCATTGAAGTGACTTATC-TGCATTAAAAGATGATAAAAGTTGTT  1096
      ||||||||||| ||||||||||| |||||| ||||||||| |||||||||
seq2  CAGAAGCATTG-AGTGACTTATCTTGCATTTAAAGATGAT-AAAGTTGTT  1093

seq1  CAGTTTCAGTAATGCAT-AATTTATTAGTTTAGAAGTAGAATTTTTGCTC  1145
      |||||||||| |||||| ||||||||||||    ||   || ||||||||
seq2  CAGTTTCAGT-ATGCATAAATTTATTAGTT----AGAGAAAATTTTGCTC  1138

seq1  T  1146
      |
seq2  T  1139

seq1: chr5_56575158_56576193
seq2: B6Ng01-348C05.g_64_1109 (reverse)

seq1  AATACAGA-GATCCAC--AGCCAATCATTAGATGGATA-TCAG--AGACT  44
      |||||||| |||||||   ||||||||||||||||||| ||||   ||||
seq2  AATACAGAGGATCCACCAGGCCAATCATTAGATGGATATTCAGGAGGACT  50

seq1  CTTATGAAAGAGACAGGGGAA-GAAATAA-GGGCCGTGGATGGGCTAGGA  92
      ||||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  CTTATGAAAGAGACAGGGGAAGGAAATAAGGGGCCGTGGATGGGCTAGGA  100

seq1  ACTCTATA-GGAAGATCAACAGTTTACTAACCTAGGCTCTCAAAGCCTAA  141
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATAGGGAAGATCAACAGTTTACTAACCTAGGCTCTCAAAGCCTAA  150

seq1  A-CCACTAACCAAAGAGCACATACATAGTACATATGTGAAGCTCAGTCTT  190
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTAACCAAAGAGCACATACATAGTACATATGTGAAGCTCAGTCTT  200

seq1  CATGTAGGCTTCAAAACAACTGGAGCTAATCTTAAAGCCAGATAGATCGA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGGCTTCAAAACAACTGGAGCTAATCTTAAAGCCAGATAGATCGA  250

seq1  AGAAAGACAGGAAAACTTGACATTGCTTGTATGGTGATGGTTATTCATGT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACAGGAAAACTTGACATTGCTTGTATGGTGATGGTTATTCATGT  300

seq1  ATGCAAAGTGAGAGTTATGGTATCATGAAATCTTGTACCTTTGCTTGAGG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGTGAGAGTTATGGTATCATGAAATCTTGTACCTTTGCTTGAGG  350

seq1  GGGAAAAAGGCATTGATGCTAAGCAGAGTATATCATAGCAGAAATGCCCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAGGCATTGATGCTAAGCAGAGTATATCATAGCAGAAATGCCCT  400

seq1  GCAGTGAGGTTCTCAAAAGCTACTGCTTGCTCTCAGCTAGTCAATATGCC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGAGGTTCTCAAAAGCTACTGCTTGCTCTCAGCTAGTCAATATGCC  450

seq1  TAGAAATGAGTTCAAGCTAGACAACAGACAATTTTCTTGTGGTTGGATAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGAGTTCAAGCTAGACAACAGACAATTTTCTTGTGGTTGGATAA  500

seq1  AAAACATTTCTGCACAACTTTTGAAATGGATTATCCATGTGCAATAGAAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTTCTGCACAACTTTTGAAATGGATTATCCATGTGCAATAGAAT  550

seq1  CTATATCCCTTTTCTCTGGCAGGAGGGTCATATGGTCCTCCACAGACATG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCCCTTTTCTCTGGCAGGAGGGTCATATGGTCCTCCACAGACATG  600

seq1  CACCTCTGGTTGTATATCAAATCCCATGCAGGCTTCAGGATTCCTCAGTC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGGTTGTATATCAAATCCCATGCAGGCTTCAGGATTCCTCAGTC  650

seq1  CCTACTCACAAGTACTTCGTATGCATCTCATGTCTCTACACATCCACCCC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCACAAGTACTTCGTATGCATCTCATGTCTCTACACATCCACCCC  700

seq1  ATTCTCCAAGGCCTGTTTTTGTTTATGGACTTCCCTTCTAACTACTCATC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCAAGGCCTGTTTTTGTTTATGGACTTCCCTTCTAACTACTCATC  750

seq1  CTCCTGATAACCCATGATTCCATTCTTCACTTGTTATACTCAATATCTAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGATAACCCATGATTCCATTCTTCACTTGTTATACTCAATATCTAT  800

seq1  TCCCTATCATTATATTTTCTATTTCTTCTATCTTCATTGTTTTCTCTTGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATCATTATATTTTCTATTTCTTCTATCTTCATTGTTTTCTCTTGA  850

seq1  CTCCCTGGTCCTGGGCATGTCCAGTGTACTACTTTTTCTCTCTGCCAGAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGTCCTGGGCATGTCCAGTGTACTACTTTTTCTCTCTGCCAGAT  900

seq1  GTGTAGAGGGAATCTTTTGTGCAATGTTTGAAAACTTCACTTGTCAATAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGAGGGAATCTTTTGTGCAATGTTTGAAAACTTCACTTGTCAATAA  950

seq1  AATGCTCTTGATCTATGAGCATAGGAAAGAAGTAGGAAGGTGAAAGTTCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTTGATCTATGAGCATAGGAAAGAAGTAGGAAGGTGAAAGTTCT  1000

seq1  GGTATAGAGAGAGGATTTCTTGGAGAGTGTCAGGTACAGGGAATTC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGAGAGAGGATTTCTTGGAGAGTGTCAGGTACAGGGAATTC  1046