BAC Information

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BAC

Clone NameB6Ng01-348J24
Chromosome5 (Build37)
Map Location 35,473,731 - 35,599,034
singlet/doubletdoublet
Overlap genenone
Upstream genePoln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1
Downstream geneAdra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209, Sorcs2, 2310020A21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348J24.bB6Ng01-348J24.g
ACCGA129866GA129867
length1,158815
definitionB6Ng01-348J24.b B6Ng01-348J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,473,731 - 35,474,849)(35,598,226 - 35,599,034)
sequence
gaattctgggattccttgtatacacacttgtgctactgggcccagtttta
tgtagattctgggtattcaaactcagggcctcatggttgtgtggcaagtg
tgttactcactgtaccaccttctttataaagataggaagctgaccaacac
agggcccattttggagggaagatagtctatccctagggactcaccttgtg
gacctccacctgcagaaagcatatgtggctaagggccacaaaagctaatc
atggcagggccatcaaagtggcctttccctggggtgctcaggctccatct
gctggtgacttgactccagatacccagcagccttgctgagccttccttgg
acctaagacgttccccaccctagaaggcagaggtgacaggcactgtcaga
gcttgctggataggctgcctgcacctgagagctgaggaccccagatgctg
ggaggaaggcctcttagagagcagtggtaggggatgctgagcaggcatag
agatggctctggctaaggatatcaagaggagctggcaccactgtttctgt
ggggacaataagccttgctttcttacaggacaaaccaaaggcctgacaag
gtggtccgagaccccctccaggactgaagcctgcccctggtgagaggaaa
tgtggttggattcagccatgagagttgcagggctggtctgggcaacgacc
ccttccttcttttttccttgttcattcactcactacttagagccctctcc
tcagctcccatcacttcctcctctcttttccctgcctgggcttcagcctc
tgctgggcctagcaagcttggctagacacaatccctggcagcggcgggtg
ggttccgactttctgtctcagtgctgccctcttctggcagaggcctgtgg
tgtctccgtttgagatcgggctcttctttttttcctcagcaggcccatct
ggaagggcttatcttgcttgggcaggaacagtggaggtagggccttttca
gggttacaggtctcttattcttggatgcctgaaggcagggttccaggagg
gaggcttcaaaatctgacttcacctctcatttccatgtatagattgcctg
gatttaaacctgggatagctgagaatggtgtcaaagtgtgagccaattgg
gcttagct
gaattcctctatgcaaatgaggtatttcccgcacccaaccctgaccaatg
ctatacaaccataccaagagcccccactcacccccccaaaggtttgaaaa
gcctttgtctgccctccctcaactaaactagctgtttcctgaagcctgtc
tccgatcttcctgaagtccgtttctccgttgttctcactccttaggtatc
catcaccctgggttgttctcacctcccttcctctctggatctattggttg
tagtctcaggcaaccatgcccttaagggagggaaagcagagtaggaagga
cacactgcttcttcaatggggtagaccctgctctcagctccgagagtgac
ccgagacaccactgccatcctgagcagccattcctgctagcaggagaagt
tcaggatgttccaagctccaggaagacatggagtctcatccatcctgggt
ctcagaacattgagacagttctccttcagcagagagggacacagctggga
tcctctggtcaatgggaacacaggtctccatcagaggaagtaggaagaca
ggcctgggggcaaggctgagcccaggaggttgccatgcctgaagaagccc
tgtgccagcctccatattttctgctctaagagtgtttacacgatgttttt
gcttgggccagcttggttttgttcctgatgcaatggcagaggctcctgcc
tttcaactagaccaggggggagggggggtgtctgtgctgagccaaaactc
cttgcaaagtcactggccttggtgtctaggtgggcatagttccaatgggc
cctgtcctccagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_35473731_35474849
seq2: B6Ng01-348J24.b_51_1208

seq1  GAATTCTGGGATTCCTTGTATACACACTTGTGCTACTGGGCCCAGTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGATTCCTTGTATACACACTTGTGCTACTGGGCCCAGTTTTA  50

seq1  TGTAGATTCTGGGTATTCAAACTCAGGGCCTCATGGTTGTGTGGCAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTCTGGGTATTCAAACTCAGGGCCTCATGGTTGTGTGGCAAGTG  100

seq1  TGTTACTCACTGTACCACCTTCTTTATAAAGATAGGAAGCTGACCAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTCACTGTACCACCTTCTTTATAAAGATAGGAAGCTGACCAACAC  150

seq1  AGGGCCCATTTTGGAGGGAAGATAGTCTATCCCTAGGGACTCACCTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCATTTTGGAGGGAAGATAGTCTATCCCTAGGGACTCACCTTGTG  200

seq1  GACCTCCACCTGCAGAAAGCATATGTGGCTAAGGGCCACAAAAGCTAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCACCTGCAGAAAGCATATGTGGCTAAGGGCCACAAAAGCTAATC  250

seq1  ATGGCAGGGCCATCAAAGTGGCCTTTCCCTGGGGTGCTCAGGCTCCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGGGCCATCAAAGTGGCCTTTCCCTGGGGTGCTCAGGCTCCATCT  300

seq1  GCTGGTGACTTGACTCCAGATACCCAGCAGCCTTGCTGAGCCTTCCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGACTTGACTCCAGATACCCAGCAGCCTTGCTGAGCCTTCCTTGG  350

seq1  ACCTAAGACGTTCCCCACCCTAGAAGGCAGAGGTGACAGGCACTGTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGACGTTCCCCACCCTAGAAGGCAGAGGTGACAGGCACTGTCAGA  400

seq1  GCTTGCTGGATAGGCTGCCTGCACCTGAGAGCTGAGGACCCCAGATGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTGGATAGGCTGCCTGCACCTGAGAGCTGAGGACCCCAGATGCTG  450

seq1  GGAGGAAGGCCTCTTAGAGAGCAGTGGTAGGGGATGCTGAGCAGGCATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGGCCTCTTAGAGAGCAGTGGTAGGGGATGCTGAGCAGGCATAG  500

seq1  AGATGGCTCTGGCTAAGGATATCAAGAGGAGCTGGCACCACTGTTTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCTGGCTAAGGATATCAAGAGGAGCTGGCACCACTGTTTCTGT  550

seq1  GGGGACAATAAGCCTTGCTTTCTTACAGGACAAACCAAAGGCCTGACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAATAAGCCTTGCTTTCTTACAGGACAAACCAAAGGCCTGACAAG  600

seq1  GTGGTCCGAGACCCCCTCCAGGACTGAAGCCTGCCCCTGGTGAGAGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCGAGACCCCCTCCAGGACTGAAGCCTGCCCCTGGTGAGAGGAAA  650

seq1  TGTGGTTGGATTCAGCCATGAGAGTTGCAGGGCTGGTCTGGGCAACGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGGATTCAGCCATGAGAGTTGCAGGGCTGGTCTGGGCAACGACC  700

seq1  CCTTCCTTCTTTTTTCCTTGTTCATTCACTCACTACTTAGAGCCCTC-CC  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTTCCTTCTTTTTTCCTTGTTCATTCACTCACTACTTAGAGCCCTCTCC  750

seq1  TCAGC-CCCATCACTTCCTCC-CTCTTTTCCCTGCCT-GGCTTCAGCCTC  796
      ||||| ||||||||||||||| ||||||||||||||| ||||||||||||
seq2  TCAGCTCCCATCACTTCCTCCTCTCTTTTCCCTGCCTGGGCTTCAGCCTC  800

seq1  TGCT-GGCCTAGGCAAGCTTGGCTAGACACAAT-CCTGGCAGCGGCGGGT  844
      |||| |||||| ||||||||||||||||||||| ||||||||||||||||
seq2  TGCTGGGCCTA-GCAAGCTTGGCTAGACACAATCCCTGGCAGCGGCGGGT  849

seq1  GGGTTCCGAC-TTCTGTCTCAGTGCTGCCCTCTTCTGGCAGAGGCCTGTG  893
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCGACTTTCTGTCTCAGTGCTGCCCTCTTCTGGCAGAGGCCTGTG  899

seq1  GTGTC-CCGTTTGAGACCGG----CTCTCTTTTTCCTCAGCAGGCCCATC  938
      ||||| |||||||||| |||     ||| |||||||||||||||||||||
seq2  GTGTCTCCGTTTGAGATCGGGCTCTTCTTTTTTTCCTCAGCAGGCCCATC  949

seq1  T-GAAGG--CTATC-TGCTT-GGCAG--ACAGT-GAGGTAGG--CCTTTC  978
      | |||||   |||| ||||| |||||  ||||| ||||||||  | ||||
seq2  TGGAAGGGCTTATCTTGCTTGGGCAGGAACAGTGGAGGTAGGGCCTTTTC  999

seq1  AGGGTTACA-GTCTCTTAT--CTGGATG-CTGAAAGCAGGG-TCCAGGAG  1023
      ||||||||| |||||||||   |||||| ||||| |||||| ||||||||
seq2  AGGGTTACAGGTCTCTTATTCTTGGATGCCTGAAGGCAGGGTTCCAGGAG  1049

seq1  GGAGGCT--CAGATCTGAC-TCA-CTCTCATTTCCATG-ACAGA-TGCCT  1067
      |||||||   | ||||||| ||| |||||||||||||| | ||| |||||
seq2  GGAGGCTTCAAAATCTGACTTCACCTCTCATTTCCATGTATAGATTGCCT  1099

seq1  -GATTTAGACC-GGGATAGCTGAGAA-GGTGTCAAAGTGAG---CAATTG  1111
       |||||| ||| |||||||||||||| |||||||||||| |   ||||||
seq2  GGATTTAAACCTGGGATAGCTGAGAATGGTGTCAAAGTGTGAGCCAATTG  1149

seq1  GGC-TAGCT  1119
      ||| |||||
seq2  GGCTTAGCT  1158

seq1: chr5_35598226_35599034
seq2: B6Ng01-348J24.g_68_882 (reverse)

seq1  ACACTGGA-GACAGGGCCCATTGGAACTATG-CCACCTAGACACCAAGG-  47
      |||||||| |||||||||||||||||||||| ||||||||||||||||| 
seq2  ACACTGGAGGACAGGGCCCATTGGAACTATGCCCACCTAGACACCAAGGC  50

seq1  CAGTGACTTTGCAAGGAG-TTTGGCTCAGCACAGACACCCCCC--TCCCC  94
      |||||||||||||||||| ||||||||||||||||||||||||   ||||
seq2  CAGTGACTTTGCAAGGAGTTTTGGCTCAGCACAGACACCCCCCCTCCCCC  100

seq1  CTGGTCTAGTTGAAAGGCAGGAGCCTCTGCCATTGCATCAGGAACAAAAC  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTAGTTGAAAGGCAGGAGCCTCTGCCATTGCATCAGGAACAAAAC  150

seq1  CAAGCTGGCCCAAGCAAAAACATCGTGTAAACACTCTTAGAGCAGAAAAT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGGCCCAAGCAAAAACATCGTGTAAACACTCTTAGAGCAGAAAAT  200

seq1  ATGGAGGCTGGCACAGGGCTTCTTCAGGCATGGCAACCTCCTGGGCTCAG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGCTGGCACAGGGCTTCTTCAGGCATGGCAACCTCCTGGGCTCAG  250

seq1  CCTTGCCCCCAGGCCTGTCTTCCTACTTCCTCTGATGGAGACCTGTGTTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCCCCAGGCCTGTCTTCCTACTTCCTCTGATGGAGACCTGTGTTC  300

seq1  CCATTGACCAGAGGATCCCAGCTGTGTCCCTCTCTGCTGAAGGAGAACTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGACCAGAGGATCCCAGCTGTGTCCCTCTCTGCTGAAGGAGAACTG  350

seq1  TCTCAATGTTCTGAGACCCAGGATGGATGAGACTCCATGTCTTCCTGGAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGTTCTGAGACCCAGGATGGATGAGACTCCATGTCTTCCTGGAG  400

seq1  CTTGGAACATCCTGAACTTCTCCTGCTAGCAGGAATGGCTGCTCAGGATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAACATCCTGAACTTCTCCTGCTAGCAGGAATGGCTGCTCAGGATG  450

seq1  GCAGTGGTGTCTCGGGTCACTCTCGGAGCTGAGAGCAGGGTCTACCCCAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTGTCTCGGGTCACTCTCGGAGCTGAGAGCAGGGTCTACCCCAT  500

seq1  TGAAGAAGCAGTGTGTCCTTCCTACTCTGCTTTCCCTCCCTTAAGGGCAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAGCAGTGTGTCCTTCCTACTCTGCTTTCCCTCCCTTAAGGGCAT  550

seq1  GGTTGCCTGAGACTACAACCAATAGATCCAGAGAGGAAGGGAGGTGAGAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCCTGAGACTACAACCAATAGATCCAGAGAGGAAGGGAGGTGAGAA  600

seq1  CAACCCAGGGTGATGGATACCTAAGGAGTGAGAACAACGGAGAAACGGAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAGGGTGATGGATACCTAAGGAGTGAGAACAACGGAGAAACGGAC  650

seq1  TTCAGGAAGATCGGAGACAGGCTTCAGGAAACAGCTAGTTTAGTTGAGGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAAGATCGGAGACAGGCTTCAGGAAACAGCTAGTTTAGTTGAGGG  700

seq1  AGGGCAGACAAAGGCTTTTCAAACCTTTGGGGGGGTGAGTGGGGGCTCTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGACAAAGGCTTTTCAAACCTTTGGGGGGGTGAGTGGGGGCTCTT  750

seq1  GGTATGGTTGTATAGCATTGGTCAGGGTTGGGTGCGGGAAATACCTCATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGTTGTATAGCATTGGTCAGGGTTGGGTGCGGGAAATACCTCATT  800

seq1  TGCATAGAGGAATTC  809
      |||||||||||||||
seq2  TGCATAGAGGAATTC  815