BAC Information

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BAC

Clone NameB6Ng01-349L24
Chromosome5 (Build37)
Map Location 136,507,853 - 136,621,353
singlet/doubletdoublet
Overlap geneDtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4
Upstream geneStx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3
Downstream geneTmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349L24.bB6Ng01-349L24.g
ACCGA130647GA130648
length1,102526
definitionB6Ng01-349L24.b B6Ng01-349L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,507,853 - 136,508,936)(136,620,822 - 136,621,353)
sequence
gaattccccgataagtgttccaccactgacgtccactccttgcccccaag
ctgtgtgtggaggacctcaggacaggaggcctactggagagagggaggct
gttggtcctgtcagatctggagggaagcagagaggcctgggctgggtcag
ctggtgggacgtgctcccggaggccccccccaccgtggctcattacctgg
acctgcactggcccaccacatgaggccagggcagtgtggcggagcctcaa
agggatgtccttccacctacccggcaggtcctggagctcctgaaggtggc
ctggaagaggcgactcatttttaccgtgggcacttccagcaccacaggtg
agaccgacaccgtggtgtggaacgagatccaccacaagaccgagatggac
cgcaacgtgacaggccacggctatccggaccccaactacctgcagaatgt
gctggctgagctcgctgcccagggagtgaccgaagactgcctggaacagc
agtgacctcgggcctgcctctgccgaccccacagccctgggcggggcggg
tgggcaggaaggtgtgccttcggtgagaggcaagagtgtgtgttgggttt
gtgtagcccactggggttgcacctcctcctaaaggttgggcttcttgcct
ctgctgccaccatcctgtctgcgccggggtctgcctggaaaatgggcacc
ctcctcagtattgtacttgtggaagcttaagctggagctacctcagtgca
cggatgggaccggcccttccagccctgggtgggctggtgacccagcaagg
ggtgagcagggacgatcacactcccagcttcaggtcagcttcttatacct
cagattttatttgcaataaagatcctatagccaacctgcatctgttggga
agttttgtgtgtccgtctgtctgtctgatgacatgttcacactgaagctg
tttgtggaagcaagcgcaattcttcaattgatgctcaatttccactcctc
acaatctaaggaaagtgaggacaaaagaccactgaacttccatatggaag
actttctggtgacacaacacatgctccgtaccatgtggatcccagcactg
tg
tctccggaggatttcatcactggaaactgctggagcctaccgcacagtag
gtgcccttctggcgatggcataacttgccttaggaaacacctgctctaga
cagtcaggctggagactgaggtaggaggggtcatacactgcaggctgacc
taggggtaagcactgcagacttccacttcacagcttcaacatggctgcct
cacaacaggcgtcaggctgcatgccggatcatgggcggttctgaggcatc
agggtcctactgttatgccctttcctcgggaaatccagaagagctcaaga
attgagaaatctttgcaaaagagtccttttatcttgagtacacacataca
cacacacacacacacagagagcataggttctgagtgcaacccctctggtg
ttttagcacttatatacagagcagttagagattctttgaatgcccagggt
ggaagggagggaaggcagactgggtaagtcataactcaggcacgatacca
tttggtaggtggggggcagggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_136507853_136508936
seq2: B6Ng01-349L24.b_48_1149

seq1  GAATTCCCCGATAAGTGTTCCACCACTGACGTCCACTCCTTGCCCCCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCGATAAGTGTTCCACCACTGACGTCCACTCCTTGCCCCCAAG  50

seq1  CTGTGTGTGGAGGACCTCAGGACAGGAGGCCTACTGGAGAGAGGGAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGGAGGACCTCAGGACAGGAGGCCTACTGGAGAGAGGGAGGCT  100

seq1  GTTGGTCCTGTCAGATCTGGAGGGAAGCAGAGAGGCCTGGGCTGGGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCCTGTCAGATCTGGAGGGAAGCAGAGAGGCCTGGGCTGGGTCAG  150

seq1  CTGGTGGGACGTGCTCCCGGAGGCCCCCCCCACCGTGGCTCATTACCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGGACGTGCTCCCGGAGGCCCCCCCCACCGTGGCTCATTACCTGG  200

seq1  ACCTGCACTGGCCCACCACATGAGGCCAGGGCAGTGTGGCGGAGCCTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCACTGGCCCACCACATGAGGCCAGGGCAGTGTGGCGGAGCCTCAA  250

seq1  AGGGATGTCCTTCCACCTACCCGGCAGGTCCTGGAGCTCCTGAAGGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGTCCTTCCACCTACCCGGCAGGTCCTGGAGCTCCTGAAGGTGGC  300

seq1  CTGGAAGAGGCGACTCATTTTTACCGTGGGCACTTCCAGCACCACAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGAGGCGACTCATTTTTACCGTGGGCACTTCCAGCACCACAGGTG  350

seq1  AGACCGACACCGTGGTGTGGAACGAGATCCACCACAAGACCGAGATGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGACACCGTGGTGTGGAACGAGATCCACCACAAGACCGAGATGGAC  400

seq1  CGCAACGTGACAGGCCACGGCTATCCGGACCCCAACTACCTGCAGAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAACGTGACAGGCCACGGCTATCCGGACCCCAACTACCTGCAGAATGT  450

seq1  GCTGGCTGAGCTCGCTGCCCAGGGAGTGACCGAAGACTGCCTGGAACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGAGCTCGCTGCCCAGGGAGTGACCGAAGACTGCCTGGAACAGC  500

seq1  AGTGACCTCGGGCCTGCCTCTGCCGACCCCACAGCCCTGGGCGGGGCGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCTCGGGCCTGCCTCTGCCGACCCCACAGCCCTGGGCGGGGCGGG  550

seq1  TGGGCAGGAAGGTGTGCCTTCGGTGAGAGGCAAGAGTGTGTGTTGGGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGAAGGTGTGCCTTCGGTGAGAGGCAAGAGTGTGTGTTGGGTTT  600

seq1  GTGTAGCCCACTGGGGTTGCACCTCCTCCTAAAGGTTGGGCTTCTTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCCCACTGGGGTTGCACCTCCTCCTAAAGGTTGGGCTTCTTGCCT  650

seq1  CTGCTGCCACCATCCTGTCTGCGCCGGGGTCTGCCTGGAAAATGGGCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCACCATCCTGTCTGCGCCGGGGTCTGCCTGGAAAATGGGCACC  700

seq1  CTCCTCAGTATTGTACTTGTGGAAGCTTAAGCTGGAGCTACCTCAGTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGTATTGTACTTGTGGAAGCTTAAGCTGGAGCTACCTCAGTGCA  750

seq1  CGGATGGGACCGGCCCTTCCAGCCCTGGGTGGGCTGGTGACCCAGCAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGGGACCGGCCCTTCCAGCCCTGGGTGGGCTGGTGACCCAGCAAGG  800

seq1  GGTGAGCAGGGACGATCACACTCCCAGCTTCAGGTCAGCTTCTTATACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCAGGGACGATCACACTCCCAGCTTCAGGTCAGCTTCTTATACCT  850

seq1  CAGATTTTATTTGCAATAAAGATCCTATAGCCAACCTGCATCTGTTGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTTATTTGCAATAAAGATCCTATAGCCAACCTGCATCTGTTGGGA  900

seq1  AGTTTTGTGTGTCCGTCTGTCTGTCTGATGACATG-TCACACTG-AGCTG  948
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  AGTTTTGTGTGTCCGTCTGTCTGTCTGATGACATGTTCACACTGAAGCTG  950

seq1  TTTGTGG-AGCAGGCGCCA-TCTTC-ATTGATGCTCA---TTCAC-CCTC  991
      ||||||| |||| |||| | ||||| |||||||||||   | ||| ||||
seq2  TTTGTGGAAGCAAGCGCAATTCTTCAATTGATGCTCAATTTCCACTCCTC  1000

seq1  AC-ATCTA--GGAAGTGAGGAC-AAAGACCACTGAAC-TCCATA-GTGAG  1035
      || |||||  | |||||||||| |||||||||||||| |||||| |  ||
seq2  ACAATCTAAGGAAAGTGAGGACAAAAGACCACTGAACTTCCATATGGAAG  1050

seq1  AC--TCCTGTGACAC-ACACATGCTCCGTACCCTGTGGTCCCCAGCACTG  1082
      ||  ||  ||||||| |||||||||||||||| |||||  ||||||||||
seq2  ACTTTCTGGTGACACAACACATGCTCCGTACCATGTGGATCCCAGCACTG  1100

seq1  TG  1084
      ||
seq2  TG  1102

seq1: chr5_136620822_136621353
seq2: B6Ng01-349L24.g_66_597 (reverse)

seq1  CCCCCCCCTGCCCCCCACCTACCAAATGGTATCGTGCCTGAGTTATGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCTGCCCCCCACCTACCAAATGGTATCGTGCCTGAGTTATGACT  50

seq1  TACCCAGTCTGCCTTCCCTCCCTTCCACCCTGGGCATTCAAAGAATCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGTCTGCCTTCCCTCCCTTCCACCCTGGGCATTCAAAGAATCTCT  100

seq1  AACTGCTCTGTATATAAGTGCTAAAACACCAGAGGGGTTGCACTCAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTCTGTATATAAGTGCTAAAACACCAGAGGGGTTGCACTCAGAAC  150

seq1  CTATGCTCTCTGTGTGTGTGTGTGTGTGTATGTGTGTACTCAAGATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTCTCTGTGTGTGTGTGTGTGTGTATGTGTGTACTCAAGATAAAA  200

seq1  GGACTCTTTTGCAAAGATTTCTCAATTCTTGAGCTCTTCTGGATTTCCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTTTTGCAAAGATTTCTCAATTCTTGAGCTCTTCTGGATTTCCCG  250

seq1  AGGAAAGGGCATAACAGTAGGACCCTGATGCCTCAGAACCGCCCATGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGGCATAACAGTAGGACCCTGATGCCTCAGAACCGCCCATGATC  300

seq1  CGGCATGCAGCCTGACGCCTGTTGTGAGGCAGCCATGTTGAAGCTGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCATGCAGCCTGACGCCTGTTGTGAGGCAGCCATGTTGAAGCTGTGAA  350

seq1  GTGGAAGTCTGCAGTGCTTACCCCTAGGTCAGCCTGCAGTGTATGACCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGTCTGCAGTGCTTACCCCTAGGTCAGCCTGCAGTGTATGACCCC  400

seq1  TCCTACCTCAGTCTCCAGCCTGACTGTCTAGAGCAGGTGTTTCCTAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCTCAGTCTCCAGCCTGACTGTCTAGAGCAGGTGTTTCCTAAGGC  450

seq1  AAGTTATGCCATCGCCAGAAGGGCACCTACTGTGCGGTAGGCTCCAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATGCCATCGCCAGAAGGGCACCTACTGTGCGGTAGGCTCCAGCAG  500

seq1  TTTCCAGTGATGAAATCCTCCGGAGAGAATTC  532
      ||||||||||||||||||||||||||||||||
seq2  TTTCCAGTGATGAAATCCTCCGGAGAGAATTC  532