BAC Information

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BAC

Clone NameB6Ng01-350I16
Chromosome5 (Build37)
Map Location 111,543,201 - 111,684,382
singlet/doubletdoublet
Overlap geneTtc28
Upstream geneLOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2
Downstream genePitpnb, Mn1, A230057G18Rik, Cryba4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350I16.bB6Ng01-350I16.g
ACCGA131180GA131181
length1,1951,019
definitionB6Ng01-350I16.b B6Ng01-350I16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,543,201 - 111,544,395)(111,683,364 - 111,684,382)
sequence
gaattctcgcttgctcagacagtggccttctcctagggtggcttcccaca
gtgaatgctatagaataaggccattggctgagcataaattcaaggtcact
aagagtttaaggtcatcctcagctacctggcaagttcaagtctagcctgg
gctacatcagacttggcctcaaaagaaactctggtatttctaaatctctt
aaagtagtcccttacttatttattgagacagagtctcactttgtggctct
tgctgtcctctaacttgctatgtggctcaaattgccatcaaacacacaga
gattaccagcctctacctcccaagttcagtaactgatagcactacacaca
cacacacacacacacacacacacacacacacacacccctctagacatata
aacaacaatttcttcactacagaataccatttccagcaggagagctgcag
tgcctcccttcacacatgagaggaaagtacgtttcttgtaagaggagcat
tgagcataaatgtgcatgtctgtcaggaatggtcgaggctcggcacagta
ggatggccgcattgctggagtcaaaaaacattccgccctcctacacctgg
gcgaggtttctggttccttcggtgccttgagatcctgtgagaaaacagga
agagcacatcagtaagatggctttagcaggctgtagcacaaactgcacac
cggttttattgtttggagcaaatcatgacgtaaagtcattctgtccttgt
tgaaagtgcaatgcacacacagctagaaggcctccagagctcgcagagca
gaccatggttgtctggaaagctgctttagaaacaggggttacagaactga
gctcggtgtccccgcagagctgtgtctcccgtcctgtggattagtaaatg
tgtactctgccgaaatggactttaagagccctctaaatagaattcaggat
tcttttctctctccccctaataaaaaagtttgttatttatttgtttattt
tcttaatttatgactggaacaataacttagttgcagagtctgttgggtgc
aaaaagtcctgagcttcgctcctctggggcgtgcaccacggcaatcgggc
actcacacacagcatctgcactccagatcagacacagtgctcgggtatct
tcgccttaatgggtgagttggaagctatcctcgttttaaaatatc
gaattcctcccttagatgcaaacaaaaacactctgatgtgcagtggtcag
aggttggcttgagctcatctctgagaccggatggactaaagatctgcgct
ggtatacactgggatgaggcctcgcagtgagcctgggccgacttgaagac
ctgcacagatcaggctgaggctgggccaaagattcctcctgggtctgagg
cggtctccgctggctgatatgtatgccacacacggtgcagaaccagcgtt
tctgggccagtggagagcgccaagcatggcatttggatttgatttttaaa
gtcagcatttgaggcacagcccagaagaaagagcagaggagagaggatcg
gttcaagggtaaggcggggtttgacagaggcagagtgggggtggcttcca
agccatgtgctaaccctgacatgcagccggcttcccgccagcactgccac
cccgtcactagttacgctgctctgtaccactgggttgttctgggctctct
ctagacaacccatgtctcttctcatggataacagttctctgggtgccttt
tccatagaggagtgaggctcccttaataatcccattcagtctcttactga
ccggccaacattttggggtttaattgcataaaatctcagatcccttccag
gtcttaaatggaatcgtggtgttaaaaaaagaaaaatagctgaaagagag
cccacaatacagagagcttccctatctttgaatccagtgagcttctgtgg
ccacgtcttgtggtggaactgggcagcgcagctcctgcggctgcatgttt
gtgggggtgagcacaccacagcaggcggtggagtgacgatcgtccccgca
ctccacagactcactgaatgagaaggcagggagccctggccatgcccact
tgccagctccttcatgcgagacacactgagcccttctgtgcagtcatagt
cagtcacacaccctttgcttccagatccaagggtctagaagatagtgagt
gacacgggttggggttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_111543201_111544395
seq2: B6Ng01-350I16.b_43_1237

seq1  GAATTCTCGCTTGCTCAGACAGTGGCCTTCTCCTAGGGTGGCTTCCCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGCTTGCTCAGACAGTGGCCTTCTCCTAGGGTGGCTTCCCACA  50

seq1  GTGAATGCTATAGAATAAGGCCATTGGCTGAGCATAAATTCAAGGTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGCTATAGAATAAGGCCATTGGCTGAGCATAAATTCAAGGTCACT  100

seq1  AAGAGTTTAAGGTCATCCTCAGCTACCTGGCAAGTTCAAGTCTAGCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTTAAGGTCATCCTCAGCTACCTGGCAAGTTCAAGTCTAGCCTGG  150

seq1  GCTACATCAGACTTGGCCTCAAAAGAAACTCTGGTATTTCTAAATCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATCAGACTTGGCCTCAAAAGAAACTCTGGTATTTCTAAATCTCTT  200

seq1  AAAGTAGTCCCTTACTTATTTATTGAGACAGAGTCTCACTTTGTGGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGTCCCTTACTTATTTATTGAGACAGAGTCTCACTTTGTGGCTCT  250

seq1  TGCTGTCCTCTAACTTGCTATGTGGCTCAAATTGCCATCAAACACACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCCTCTAACTTGCTATGTGGCTCAAATTGCCATCAAACACACAGA  300

seq1  GATTACCAGCCTCTACCTCCCAAGTTCAGTAACTGATAGCACTACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACCAGCCTCTACCTCCCAAGTTCAGTAACTGATAGCACTACACACA  350

seq1  CACACACACACACACACACACACACACACACACACCCCTCTAGACATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACCCCTCTAGACATATA  400

seq1  AACAACAATTTCTTCACTACAGAATACCATTTCCAGCAGGAGAGCTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAATTTCTTCACTACAGAATACCATTTCCAGCAGGAGAGCTGCAG  450

seq1  TGCCTCCCTTCACACATGAGAGGAAAGTACGTTTCTTGTAAGAGGAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCTTCACACATGAGAGGAAAGTACGTTTCTTGTAAGAGGAGCAT  500

seq1  TGAGCATAAATGTGCATGTCTGTCAGGAATGGTCGAGGCTCGGCACAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATAAATGTGCATGTCTGTCAGGAATGGTCGAGGCTCGGCACAGTA  550

seq1  GGATGGCCGCATTGCTGGAGTCAAAAAACATTCCGCCCTCCTACACCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCCGCATTGCTGGAGTCAAAAAACATTCCGCCCTCCTACACCTGG  600

seq1  GCGAGGTTTCTGGTTCCTTCGGTGCCTTGAGATCCTGTGAGAAAACAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGTTTCTGGTTCCTTCGGTGCCTTGAGATCCTGTGAGAAAACAGGA  650

seq1  AGAGCACATCAGTAAGATGGCTTTAGCAGGCTGTAGCACAAACTGCACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACATCAGTAAGATGGCTTTAGCAGGCTGTAGCACAAACTGCACAC  700

seq1  CGGTTTTATTGTTTGGAGCAAATCATGACGTAAAGTCATTCTGTCCTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTTATTGTTTGGAGCAAATCATGACGTAAAGTCATTCTGTCCTTGT  750

seq1  TGAAAGTGCAATGCACACACAGCTAGAAGGCCTCCAGAGCTCGCAGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTGCAATGCACACACAGCTAGAAGGCCTCCAGAGCTCGCAGAGCA  800

seq1  GACCATGGTTGTCTGGAAAGCTGCTTTAGAAACAGGGGTTACAGAACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGGTTGTCTGGAAAGCTGCTTTAGAAACAGGGGTTACAGAACTGA  850

seq1  GCTCGGTGTCCCCGCAGAGCTGTGTCTCCCGTCCTGTGGATTAGTAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGTGTCCCCGCAGAGCTGTGTCTCCCGTCCTGTGGATTAGTAAATG  900

seq1  TGTACTCTGCCGAAATGGACTTTAAGAGCCCTCTAAATAGAATTCAGGGT  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGTACTCTGCCGAAATGGACTTTAAGAGCCCTCTAAATAGAATTCAGGAT  950

seq1  TC-TTTCTCTCTCCCCCTAATAAAAAAGTTTGTTTATTTATTTGTTTATT  999
      || ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTTTTCTCTCTCCCCCTAATAAAAAAGTTTG-TTATTTATTTGTTTATT  999

seq1  TTCTTAA-TTATGACTGGGAACATAACTTAGTTTGCAGAGTCTTGTTGGG  1048
      ||||||| |||||||||| |  ||||||||| |||||||||| |||||||
seq2  TTCTTAATTTATGACTGGAACAATAACTTAG-TTGCAGAGTC-TGTTGGG  1047

seq1  TGCAAAAAGTCCTGAGC-TCGCT-CTCTGGGGCGGTGCACACGGGCATCC  1096
      ||||||||||||||||| ||||| ||||||||| ||||||   ||||  |
seq2  TGCAAAAAGTCCTGAGCTTCGCTCCTCTGGGGC-GTGCACCACGGCAATC  1096

seq1  GGGCACTCACAC-CAGCATCCTGGCACT-CAGAAGGCAGACACAGGTGCT  1144
      |||||||||||| |||||||   ||||| ||||   |||||||| |||||
seq2  GGGCACTCACACACAGCATC--TGCACTCCAGA--TCAGACACA-GTGCT  1141

seq1  CGGGTATCTTCGCCTTTAT-GGTGAGTTTGAAGCTA--CTCTGTTTTAAA  1191
      |||||||||||||||| || |||||||| |||||||  |||  ||| |||
seq2  CGGGTATCTTCGCCTTAATGGGTGAGTTGGAAGCTATCCTCGTTTTAAAA  1191

seq1  TATC  1195
      ||||
seq2  TATC  1195

seq1: chr5_111683364_111684382
seq2: B6Ng01-350I16.g_69_1087 (reverse)

seq1  CCCACCCCCACCCCCGTGTCACTCACTATC-TCTAGA-CCTTGGATCTGG  48
      |||| |||||  |||||||||||||||||| |||||| ||||||||||||
seq2  CCCAACCCCA-ACCCGTGTCACTCACTATCTTCTAGACCCTTGGATCTGG  49

seq1  AAGCAAAGGTTGTGTGACTGACTATGACTGCACAGAAGGGCTCAGTGTGT  98
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGGGTGTGTGACTGACTATGACTGCACAGAAGGGCTCAGTGTGT  99

seq1  CTCGCATGAAGGAGCTGGCAAGTGGGCATGGCCAGGGCTCCCTGCCTTCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCATGAAGGAGCTGGCAAGTGGGCATGGCCAGGGCTCCCTGCCTTCT  149

seq1  CATTCAGTGAGTCTGTGGAGTGCGGGGACGATCGTCACTCCACCGCCTGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGTGAGTCTGTGGAGTGCGGGGACGATCGTCACTCCACCGCCTGC  199

seq1  TGTGGTGTGCTCACCCCCACAAACATGCAGCCGCAGGAGCCTGCGCTGCC  248
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGTGGTGTGCTCACCCCCACAAACATGCAGCCGCAGGAG-CTGCGCTGCC  248

seq1  CAGTTCCACCACAAGACGTGGCCACAGAAGCTCACTGGATTCAAAGATAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCACCACAAGACGTGGCCACAGAAGCTCACTGGATTCAAAGATAG  298

seq1  GGAAGCTCTCTGTATTGTGGGCTCTCTTTCAGCTATTTTTCTTTTTTTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTCTCTGTATTGTGGGCTCTCTTTCAGCTATTTTTCTTTTTTTAA  348

seq1  CACCACGATTCCATTTAAGACCTGGAAGGGATCTGAGATTTTATGCAATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACGATTCCATTTAAGACCTGGAAGGGATCTGAGATTTTATGCAATT  398

seq1  AAACCCCAAAATGTTGGCCGGTCAGTAAGAGACTGAATGGGATTATTAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCAAAATGTTGGCCGGTCAGTAAGAGACTGAATGGGATTATTAAG  448

seq1  GGAGCCTCACTCCTCTATGGAAAAGGCACCCAGAGAACTGTTATCCATGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTCACTCCTCTATGGAAAAGGCACCCAGAGAACTGTTATCCATGA  498

seq1  GAAGAGACATGGGTTGTCTAGAGAGAGCCCAGAACAACCCAGTGGTACAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGACATGGGTTGTCTAGAGAGAGCCCAGAACAACCCAGTGGTACAG  548

seq1  AGCAGCGTAACTAGTGACGGGGTGGCAGTGCTGGCGGGAAGCCGGCTGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCGTAACTAGTGACGGGGTGGCAGTGCTGGCGGGAAGCCGGCTGCA  598

seq1  TGTCAGGGTTAGCACATGGCTTGGAAGCCACCCCCACTCTGCCTCTGTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGGTTAGCACATGGCTTGGAAGCCACCCCCACTCTGCCTCTGTCA  648

seq1  AACCCCGCCTTACCCTTGAACCGATCCTCTCTCCTCTGCTCTTTCTTCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCGCCTTACCCTTGAACCGATCCTCTCTCCTCTGCTCTTTCTTCTG  698

seq1  GGCTGTGCCTCAAATGCTGACTTTAAAAATCAAATCCAAATGCCATGCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGCCTCAAATGCTGACTTTAAAAATCAAATCCAAATGCCATGCTT  748

seq1  GGCGCTCTCCACTGGCCCAGAAACGCTGGTTCTGCACCGTGTGTGGCATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTCTCCACTGGCCCAGAAACGCTGGTTCTGCACCGTGTGTGGCATA  798

seq1  CATATCAGCCAGCGGAGACCGCCTCAGACCCAGGAGGAATCTTTGGCCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAGCCAGCGGAGACCGCCTCAGACCCAGGAGGAATCTTTGGCCCA  848

seq1  GCCTCAGCCTGATCTGTGCAGGTCTTCAAGTCGGCCCAGGCTCACTGCGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCCTGATCTGTGCAGGTCTTCAAGTCGGCCCAGGCTCACTGCGA  898

seq1  GGCCTCATCCCAGTGTATACCAGCGCAGATCTTTAGTCCATCCGGTCTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCATCCCAGTGTATACCAGCGCAGATCTTTAGTCCATCCGGTCTCA  948

seq1  GAGATGAGCTCAAGCCAACCTCTGACCACTGCACATCAGAGTGTTTTTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGCTCAAGCCAACCTCTGACCACTGCACATCAGAGTGTTTTTGT  998

seq1  TTGCATCTAAGGGAGGAATTC  1019
      |||||||||||||||||||||
seq2  TTGCATCTAAGGGAGGAATTC  1019