BAC Information

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BAC

Clone NameMSMg01-045H08
Chromosome5 (Build37)
Map Location 143,652,166 - 143,652,510
singlet/doubletsinglet
Overlap geneFbxl18
Upstream geneSdk1, LOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, D430018E03Rik
Downstream geneLOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045H08.T7 (MSMg01no045_h08.b1)MSMg01-045H08.TJ (MSMg01no045_h08.g1)
ACCAG276087AG276088
length692731
length of high quality
(start - end)
345 (46 - 390)375 (74 - 448)
definitionCHROMAT_FILE: MSMg01no045_h08.b1 PHD_FILE: MSMg01no045_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:25 2005CHROMAT_FILE: MSMg01no045_h08.g1 PHD_FILE: MSMg01no045_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:25 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AGCTCCTATAGTTTCAGAATCCGCGGAATTCTAACACAGCCTGACGCTAT
ATACACACTAAAATCCTGTCTTGAAAATTAATTAATTTTTAAACATTTAA
AAATCTAAAAATAAAAATGAAAAAAAAGCCAGGTTTTCAGGCTTGGTGTC
AAGCTCCTTGGCCTCTGTGGATTTGTTGTTGCTGTTGTTGTATTGTTTCT
GATAGACAAGGGTCTCCTGTAGCCACATGCACTATGTCCACCCCCCACCC
ACCACCCCACCCCCATCATGGGGCAAGCCGCCTACCCTCTTCTACCCTGG
CTCTGTCATTCAGTGTAACCTGAAGATCATTCCCAACCAGTCTTGTGTGC
AAACATCAGTGCTCCCTCTGTTGTCCCTCACTTCCAGGACATGCCCCCAC
AGGAGGAGGCAGTGTTAGAGGCAGCAGGTGACACCCACCTGCTTGGCTTC
TCTGATGAGATCCTCCTACATATCCTGAGCCATGTCCCCCAAGACCAGTT
CATTGACTGATCCTCCTGCCTCCCTTCCCAAGGGTTGTCTGGCTGCTTTT
GCATCTGCAGTACTGTACATGTAGTAGTTTTCTCCCTGAATCTCATATGT
ATATTTCTATGTTTTTTTTTCTTGATTTATCTCTTTTTTTCCTTCTCCTC
TTCTATAAACTGACATTACTTTTCTAACCCTTCTTTCCTCTC
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGAGATCTGCCTGCCTCTGCCTCCT
AAGACCTAGGACTCAAGGTGTGTCCTGCTCAGCCATGCAGCCTGCTGGGA
CATCTTGTTGGCTGCTTCTGTCTGAGCTGTTCTAGCTAATAGGCCACATC
AGGTCTCCAAACAGTATTATTCCAGAAGATTCTTCGGCATCCTCCAGCTC
TTACATTTTTTTCCCTTCTCTTTTCTGGTATGTTCTCTGACTTTTAGAAG
GTGGGATGAGTCAGGCAGTGGTGGCGCATGCCTTTAATCCCAGCATTTGG
GAGGCAGAGGGCAGGTGGATCTCTGAGTTTGAGGCCAGCCTGGTCTACAG
AGTGAGTTCCAGCACAGCCACCTGGACAGAAACCCTGTCTCGAAAAACAA
TAAACAACAACATCTAATAAGAAGGTGGGGTGGGAATTTGATATAGATGT
CTCATCTTTATATTCTCTCTTATTTTTTATCCTTTTTCTCTTTTTCATCG
TGTTCTATCGCCTTTTCTTTCTTTTGTCTTTATTATGTCATTTTATTTTC
TTCCTTCTTATCCCCCCTTTTTTTATTTTCTTCCTCTTTTAGCATTCATT
TTTTTCTCTCTCTTTTTTTTTTATATTTCCGCTATGTTTATTTTTTATAA
TTTATCTTTGCTCCTACTATTTTTTTCAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_h08.b1 MSMg01no045_h08.b1 CHROMAT_FILE:
MSMg01no045_h08.b1 PHD_FILE: MSMg01no045_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:25 2005
         (345 letters)



>mm_chr5_143651966_143652710
          Length = 745

 Score =  636 bits (329), Expect = 0.0
 Identities = 341/345 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctatatacacactaaaatcctgtcttgaaaattaattaatttttaaacatttaaaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctatatacacactaaaatcctgtcttgaaaattaattaatttttaaacatttaaaaatc 260

                                                                       
Query: 61  taaaaataaaaatgaaaaaaaagccaggttttcaggcttggtgtcaagctccttggcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaaataaaaatgaaaaaaaagccaggttttcaggcttggtgtcaagctccttggcctc 320

                                                                       
Query: 121 tgtggatttgttgttgctgttgttgtattgtttctgatagacaagggtctcctgtagcca 180
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgggtttgttgttgctgttgttgttttgtttctgatagacaagggtctcctgtagcca 380

                                                                       
Query: 181 catgcactatgtccaccccccacccaccaccccacccccatcatggggcaagccgcctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgcactatgtccaccccccacccaccaccccacccccatcatggggcaagccgcctac 440

                                                                       
Query: 241 cctcttctaccctggctctgtcattcagtgtaacctgaagatcattcccaaccagtcttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 441 cctcttctaccctggctctgtcattcagtgtaacctgaagatcattcgcagccagtcttg 500

                                                        
Query: 301 tgtgcaaacatcagtgctccctctgttgtccctcacttccaggac 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgcaaacatcagtgctccctctgttgtccctcacttccaggac 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)