BAC Information

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BAC

Clone NameMSMg01-045H10
Chromosome5 (Build37)
Map Location 63,807,108 - 63,807,448
singlet/doubletsinglet
Overlap genenone
Upstream geneCentd1
Downstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045H10.T7 (MSMg01no045_h10.b1)MSMg01-045H10.TJ (MSMg01no045_h10.g1)
ACCAG276091AG276092
length760758
length of high quality
(start - end)
444 (98 - 541)341 (120 - 460)
definitionCHROMAT_FILE: MSMg01no045_h10.b1 PHD_FILE: MSMg01no045_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:25 2005CHROMAT_FILE: MSMg01no045_h10.g1 PHD_FILE: MSMg01no045_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTNNTTTTNNNNNNNNNTTTTTTTTTNTGNNNNNNNTTTTTTCTTTTA
NCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGC
GGAATTCATTGATTTTACCAGCTAAATAGTACTCCATTGTGTAGATGTAC
CACATTTTCTGTATCCATTCCTCTGATGAAGGGCATCTGGGTTCTTTCCA
TCTCCTGGCTACTATAAATAAGGCTACTATGAACATAGTGGAGCATGTGT
CCTTATTACATGTTGAAACATCTTCTGGGTATATGCCCAGGAGTGTTATA
GTTGGGTCCTCAGGTAGTACTATGTCCAATTTTCTGAAGAACCACCAAAC
ATTTTTCCATAGTGGTTGTACCAGTTTGCAATCCAACCAGCAGTGGAGGA
GTGTTCCTCTTTCTCCACAACCTCACCAGCATGTGCTTTTCTCCTGAGTT
TTTAATCTTAGCCATTCTGAATGGTATGAGGTGGAATCTCAGAGATGTTT
TGATTTGCATTTCCCTGATGGCTAAAGATGTTAAATATTCCTTTAGGTGC
TTCTCAGACATTGGGTATTCCTCAGTTGAGAATTTTTTGTTTAGCTCTGT
AACCCTTTCTTAACAGGGTTATTTGTTTCTCTGGGGACTCTTGACGTCTT
TGTCTATAATGGCAATGAGCCCTCCCGACTCTCCCGAGCTTCCTAGGACT
ACAACTTCCTACCAAAAAGACTCATTGTAGGGACCCACGGTTCTAGCTGC
CTATGTAACA
NNTTTTTTTTTTTTTTCCNCCCCCTCCTCNTTTTCCTNCTTTTTCTATTT
TTGATGATATGGGTGGCCTGGCGGCGCCTGGCTGCAAAAAAAGGTGAACT
ATAGAAGTTCCCCGAAATCAATGGTTTAGGAGTGTTTTCAGTATTTTGAT
AATCTACTCCCTTCTTTCCATTAAAATCTATTTTTCAGGTGAGCATACGA
TGTGATAGGCATTTAACATGATTCCATGCTGTTGGAATATAGATTGCATA
TTGGAAAGAGCCAAGAGGCAGCTGGAGCCAGCAGCAGCAGCCAGGGTGAA
AAGGCACCCCTGGCTTGCTAAGGACTCAGGCCTCTAAGCAGGCTCAGAAA
AGCCAGCTAGAGGTCTGACTTTGCAACAGTCATGTTTTTAGTGAGGTGTC
CAGGGACAGGACTAGATGGTTGATGGCTATTGTTCTTAATTTACTTTTAG
GTTTCCTAGACAGGTAAAGGTTTGAAATAGTGGACACCATTAAACCTTTG
GAGAGAAATTAACAGCTAAACTGAACTGGGCCCAAACCAGAAAACAGTAA
CTACAACAGCCTGAGGTTGGATAAAAGATTCTAGAACTTGCTCACCTTCT
ATAGTAGACATTTTAAAACCATTGGGCAGTAATGGCATCTACTGGCCTCT
GATTCTGTTTACCTGATTTTGACTGTATTATATTCCAGAATAAAAATATA
ATTTTAGTGATAACCCCTGGATTTATTTCCAAGTTCCATATCTACCCTTA
TGGGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_h10.g1 MSMg01no045_h10.g1 CHROMAT_FILE:
MSMg01no045_h10.g1 PHD_FILE: MSMg01no045_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:25 2005
         (341 letters)



>mm_chr5_63806908_63807648
          Length = 741

 Score =  636 bits (329), Expect = 0.0
 Identities = 338/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatggtttaggagtgttttcagtattttgataatctactcccttctttccattaaaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aatggtttaggagtgttttcagtattttgataatctactcccttctttccattaaaatct 482

                                                                       
Query: 61  atttttcaggtgagcatacgatgtgataggcatttaacatgattccatgctgttggaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atttttcaggtgagcatacgatgtgataggcatttaacatgattccatgctgttggaata 422

                                                                       
Query: 121 tagattgcatattggaaagagccaagaggcagctggagccagcagcagcagccagggtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tagattgcatattggaaagagccaagaggcagctggagccagcagcagcagccagggtga 362

                                                                       
Query: 181 aaaggcacccctggcttgctaaggactcaggcctctaagcaggctcagaaaagccagcta 240
           ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 361 aaaggtacccctggcttgctaaggactcaggcctctaagcaggttcagaaaagccagcta 302

                                                                       
Query: 241 gaggtctgactttgcaacagtcatgtttttagtgaggtgtccagggacaggactagatgg 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gagggctgactttgcaacagtcatgtttttagtgaggtgtccagggacaggactagatgg 242

                                                    
Query: 301 ttgatggctattgttcttaatttacttttaggtttcctaga 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttgatggctattgttcttaatttacttttaggtttcctaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)