BAC Information

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BAC

Clone NameMSMg01-045M19
Chromosome5 (Build37)
Map Location 9,531,882 - 9,532,340
singlet/doubletsinglet
Overlap geneGrm3
Upstream geneGm440, Abcb1a, EG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik
Downstream geneLOC100042768, LOC625446, LOC435832, LOC100041395, LOC381612, EG625586
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045M19.T7 (MSMg01no045_m19.b1)MSMg01-045M19.TJ (MSMg01no045_m19.g1)
ACCAG276341AG276342
length664693
length of high quality
(start - end)
459 (43 - 501)226 (60 - 285)
definitionCHROMAT_FILE: MSMg01no045_m19.b1 PHD_FILE: MSMg01no045_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:50 2005CHROMAT_FILE: MSMg01no045_m19.g1 PHD_FILE: MSMg01no045_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACATACTAATGCGCGGAATCATAGGTTGCAAAAAAAAGAGAGAAATAGC
TGTCTCTGTTTGTATGTCTTTACACATGTGTGGGAAGCAGATGATCTAAG
AAACGTTAGTCTTTCACCTTTCCCCCAATTTCTTCCTTCTAAAATCACAC
ATTATCCAGCAAAGCTTTGAAAAGCAGGACTTTATGCTGATTCCAATTGC
TGCCTTAAAAGTGGTATTACTTGTGCTTCGAATGAGTTTCTCTACAGTGT
ATTCAAGAAAGACAATCATATATCCTAAAGCCGACAAAAGAAGTTGTATT
CCAAGGGTAATTTTGAAACTGTTGCAAGAAAGTATTGAAAACTGACCATT
CTAGCAGTGACAATTAGAGATGGAGGGAACCAGCCAAGCATAATGCTGTG
CTGCCCAGCAGGGCTGGGGCAAAATCACCTCCAAATGGCTGGGATTAGCA
GCCACAAAATGGACAAGTCTAAAAACGGCAATTTCTTCAGTGCAATGCTC
ATGGGTACCTGATCCAAGACATACAATATTTAAACCCTTGAATGCCGAAT
CACAGACTGCCTTCACCTCCTTCCAAAGTGGTCCATTGCTAGTTCCAAAG
TGCTTAAGAGTACTAGCTGCTGTTACAAAGAACCGGGTTCAGGTGCCAGT
ACCCACACTCAACG
TGGAGGACGCCTGGCTTCCAACAACAGGNNGAXXXXXXXXXXXXXXXXXX
XXXXXXCTCTTAGAGATAACCTGTTGTTGGGTATGGTGGCACATTCTTTT
AATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATCTCTGTGAGTTAAAGG
GCAGGCCGCTCTACAGAGTGAGTTTCAGGACTACCAGGGCTGCAAAGAAA
CCCTGTCTTTGTAAAAAACAAAATGGAGGAGAGAGAGAGAGAGAGAGAGA
GAAAGAGAGAGAGGAGAGAGAGGCAGAGACAGAGAGACAGACACAGACAG
AGACTTATAGAGAGACAGACACAGAGAGAGACAGAGAGACAGCGAGAGAC
AGAGACCGAGAGACAGAGAGAGCCAGACATAGAGAGAGATAGAGACAGAG
AGACAGATCCAGAGAGAGACAGAGAGAGAGACTGAGAGAGAGAGAGATAG
AGAGAGATAGAGAGAGAGAACACCTCTGAGCTGTTATGAAGTTTATTTCC
TTTTTTGCCTGACATCACTACCACTGCCTGCAGATCTCTTCTTGGAATGA
TTCCCTTCTTATTAGCCATAGAAATACTTTAATTATTTTAATATAAAATG
CACTTTATCCAATGACTATGGGCATGTTTGCTAACATTACCCCCCTTTTT
CTTGTTTTCCCGGCACCTATTCAGAGTTCCCCAATAAATCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_m19.b1 MSMg01no045_m19.b1 CHROMAT_FILE:
MSMg01no045_m19.b1 PHD_FILE: MSMg01no045_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:50 2005
         (459 letters)



>mm_chr5_9531682_9532540
          Length = 859

 Score =  857 bits (443), Expect = 0.0
 Identities = 455/459 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaatagctgtctctgtttgtatgtctttacacatgtgtgggaagcagatgatctaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gaaatagctgtctctgtttgtatgtctttacacatgtgtgggaagcagatgatctaagaa 600

                                                                       
Query: 61  acgttagtctttcacctttcccccaatttcttccttctaaaatcacacattatccagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 acgttagtctttcacctttcccccaatttcttccttctaaaatcacacattatccagcaa 540

                                                                       
Query: 121 agctttgaaaagcaggactttatgctgattccaattgctgccttaaaagtggtattactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agctttgaaaagcaggactttatgctgattccaattgctgccttaaaagtggtattactt 480

                                                                       
Query: 181 gtgcttcgaatgagtttctctacagtgtattcaagaaagacaatcatatatcctaaagcc 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 479 gtgcttcgaatgagtttctctacagtgcattcaagaaagacaatcatatatcctaaagcc 420

                                                                       
Query: 241 gacaaaagaagttgtattccaagggtaattttgaaactgttgcaagaaagtattgaaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gacaaaagaagttgtattccaagggtaattttgaaactgttgcaagaaagtattgaaaac 360

                                                                       
Query: 301 tgaccattctagcagtgacaattagagatggagggaaccagccaagcataatgctgtgct 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 359 tgaccattctagcagtgacaattagagatggagggaaccagcctagcataatgctgtgct 300

                                                                       
Query: 361 gcccagcagggctggggcaaaatcacctccaaatggctgggattagcagccacaaaatgg 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 299 gcccagcagggctggggcaaaatcacctccaaatggctgtgattagcagccacaaaatgg 240

                                                  
Query: 421 acaagtctaaaaacggcaatttcttcagtgcaatgctca 459
           ||||||||||||||||||||||||| |||||||||||||
Sbjct: 239 acaagtctaaaaacggcaatttctttagtgcaatgctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)