CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTATAGGATATCTAATCTATAGTAAAGACAAACCTAAAATAACTTTT
TGAATGCTCATAATTGCATTCCCCATAATGAGAACAAATCATTTGTCAGT
TTAATGTCAAAATGCAGACAGTAATACTAAGTGCTGAAAGTAAAAAACAG
CAACAGTGAATGTGTAGGTATTAAGAAGTAATAATTTCAAGGTATTCATA
CTGTCATAACAAGGCCAGTTAGGCTAGCGTTAAAACACGGGTAGGGGTTT
GGAGGATTGTGGATATATTAGGGCAAGTGTGAAGATAAAATCAGAAGCTG
TATATTGAGAAGTTAATACTCAATTAGATGCTTGTTGAGTACTTCAGGAA
ATATAGTAAATCTATTATTAAAATATCTAATTTTCCAACTAACAGTATAA
TGTCCATTTTTATTCCCATTGTATAGAGGAAAGTACTTGGCACAGAGAGT
TTAAACACTTTCCCAGCATTACATACTTAGCAATCAGAAGACTAGGAATT
GAAATGGGTCCAGAGGATATTTTCTTAGCCAAAGAGTTTTACAGTCTCAC
TGACTAGACTGCTGAGCTATGCTAAGGATTTAATATTATTTTAAGTTTTC
TTTATTCTCAAGGCATTTTCAAAATTGGCATGAGAGGATACTAAAATTCT
GAT

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTTTTT
AATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATA
TATTGGATATTAGTCCCCTATCAGATTTAGGATTGGTAAAAATCCTTTCC
TAATCTGTTGGTGTCCTTTTTGTCTTATTGACAGTGTCTTTTGCCGTACA
GGAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTACAG
CACAAGCCATTGCTGTTCTGTTTAGGAATTTTTTCCCCTGTGCCCATATC
TTCGAGGCTTTTCCCTACTTTCTTCTCTATTAATTTCAGTGTCCCTGGTC
TTATGTGGAAGTCTTTGATCCACTTAGACTTGAGCTTTGCACAAGGAGAT
AAGAATGGGTCAATTCGCATTCTTCTACATGATAACCACCAGTTGTGCCA
GCACCAATTGTTGAAAATGCTGTCTTTTTTTCCACTGGATGGTTTTAGCT
CCCTTGTCAAAGATCAAGTGACCATAGCTGTGTGTATTCATTTCTGGGTC
TTAAATTCTATTCTATTGATCTACCTGTCTGTCACTGTACCAGTACCATG
CAGTTTTTTATCACAATTGCTCTGTAGTACAGCTTAATGTCAGGCATGGT

Query= MSMg01no046_d20.b1 MSMg01no046_d20.b1 CHROMAT_FILE:
MSMg01no046_d20.b1 PHD_FILE: MSMg01no046_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:22 2005
         (661 letters)



>mm_chr5_16230783_16231843
          Length = 1061

 Score = 1093 bits (565), Expect = 0.0
 Identities = 571/573 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactataggatatctaatctatagtaaagacaaacctaaaataactttttgaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ggaattcactataggatatctaatctatagtaaagacaaacctaaaataactttttgaat 514

                                                                       
Query: 64  gctcataattgcattccccataatgagaacaaatcatttgtcagtttaatgtcaaaatgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gctcataattgcattccccataatgagaacaaatcatttgtcagtttaatgtcaaaatgc 454

                                                                       
Query: 124 agacagtaatactaagtgctgaaagtaaaaaacagcaacagtgaatgtgtaggtattaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 agacagtaatactaagtgctgaaagtaaaaaacagcaacagtgaatgtgtaggtattaag 394

                                                                       
Query: 184 aagtaataatttcaaggtattcatactgtcataacaaggccagttaggctagcgttaaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 393 aagtaataatttcaaggtattcatactgtcataacaaggccagttaggctagcattaaaa 334

                                                                       
Query: 244 cacgggtaggggtttggaggattgtggatatattagggcaagtgtgaagataaaatcaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cacgggtaggggtttggaggattgtggatatattagggcaagtgtgaagataaaatcaga 274

                                                                       
Query: 304 agctgtatattgagaagttaatactcaattagatgcttgttgagtacttcaggaaatata 363
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 agctgtatattgagaaggtaatactcaattagatgcttgttgagtacttcaggaaatata 214

                                                                       
Query: 364 gtaaatctattattaaaatatctaattttccaactaacagtataatgtccatttttattc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gtaaatctattattaaaatatctaattttccaactaacagtataatgtccatttttattc 154

                                                                       
Query: 424 ccattgtatagaggaaagtacttggcacagagagtttaaacactttcccagcattacata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ccattgtatagaggaaagtacttggcacagagagtttaaacactttcccagcattacata 94

                                                                       
Query: 484 cttagcaatcagaagactaggaattgaaatgggtccagaggatattttcttagccaaaga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  cttagcaatcagaagactaggaattgaaatgggtccagaggatattttcttagccaaaga 34

                                            
Query: 544 gttttacagtctcactgactagactgctgagct 576
           |||||||||||||||||||||||||||||||||
Sbjct: 33  gttttacagtctcactgactagactgctgagct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)