BAC Information

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BAC

Clone NameMSMg01-047L11
Chromosome5 (Build37)
Map Location 59,885,616 - 59,981,480
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041385, LOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047L11.T7 (MSMg01no047_l11.b1)MSMg01-047L11.TJ (MSMg01no047_l11.g1)
ACCAG277684AG277685
length721699
length of high quality
(start - end)
583 (46 - 628)207 (79 - 285)
definitionCHROMAT_FILE: MSMg01no047_l11.b1 PHD_FILE: MSMg01no047_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:07 2005CHROMAT_FILE: MSMg01no047_l11.g1 PHD_FILE: MSMg01no047_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,980,880 - 59,981,480)(59,885,616 - 59,885,816)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAATAGCTCTAGTTGCCTGTTTATATATAAGAAGAAACTATATA
TCTATATATGTGTGTGTGTATATATATATACATATATATATATATATGCC
GCAGTAGTCACTAAGGAGCAGTTGATTAATTCTCAGAACCTAAGTGTTGC
TCTCTTAAAAAGAAAAAAATCTTCTCTTTAACTTTTGAAGTTCATGTTTA
CGTATATGTATATGTATGATTCTTGCCTGCTGACATGTGTCCAGTATCTT
CAGTGGCCAGAAGAGGAAGTTGTATTTCCTGGAACTGGAGTCACAGGTTC
TAGTGTACTGCAGGATTTCAGTGCTCGGAACTGAAGGCGTCTCTTTTATA
AGAGCCACCAGTACTCTTAAGTGTTGAGCCATCTCTGTAGCAAAGGGATC
AGTTTCCTTTGGAGAGGTGCACTGGCAGGCTCTGTAGACATCAGTGGATA
GTCCCACATACATGTACTCATGGTCAGCATAAACTGGATTTTAATAATTA
TTTTATTAGTAAATTTAAATTAATTAAATATTACATACATTTATTATATA
AATTTGATAATATTTAATATTACGTATATTACAACAAGGTATGAACCCTA
AAGAAAATTATGTCAGTCAAAGTGCAGATATTTCATGTAAAGTTTCTTGC
GGCGCGCACCAAAAGGTATAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGATGAAGTAAGAACTAGA
ATAAGACAATGCACTCCAATCCAAGTTTATTTTAAATTGAAGATCATTGT
GTATGAGAACTGCTAAAAATTAAAATACCATTCCAAATAATATATTATAA
TTATCATGGCTTTTTTTTTCTCCAGACTCCCTAAAAGCTCCTTTGATAAA
TGACTATATGTGAAATAAGATTTGATAACAACTGATTTAGAGCATCTGAA
ACATATGTTTGTCATTTCAGGCAGGTCCCAGGAANGAGGAAATACCCCTT
TAATGAATATTCCTCATAAAAACATTGTAAAAGGATGGGAACAATTTTTG
TGGAAAAAAAAAATTCCTTTCCATCCAAATGGTTAAAAAGGGCCTTGAAA
TGGGAAAAATTTTTTTAAAAAACCCCCCCCGGGCTTTTGGGGTGTTTAAG
GAAAAAATGGGCCCCCCCTAAAAAAAAACTTTTTGAATTTGGACCCACGG
GGTTTCTTTTATAACCCCCCACCAAAAAATTTTTCTTTTTTGTTTTTTTC
CCCCCCCCCCCGAGAAAATTTAACCCCCCTTATCTTCGGGGGGGGGAGGT
TTAAAACAATTTTTATAAAAACACGCCTCCACCTAAAGAATAATAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_l11.b1 MSMg01no047_l11.b1 CHROMAT_FILE:
MSMg01no047_l11.b1 PHD_FILE: MSMg01no047_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:07 2005
         (583 letters)



>mm_chr5_59980880_59981862
          Length = 983

 Score =  888 bits (459), Expect = 0.0
 Identities = 535/601 (89%), Gaps = 62/601 (10%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaatagctctagttgcctgtttatatataagaagaaactatatatctatatat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gaattctcaatagctctagttgcctgtttatatataagaagaaactatatatctatatat 542

                                                                       
Query: 65  gtgtgtgtgtatatatatatac-------------------------------------- 86
           ||||||||||||||||||||||                                      
Sbjct: 541 gtgtgtgtgtatatatatatacatatatatatatatatatatatatatatatatatatat 482

                                                                       
Query: 87  ------------------------atatatatatatatatgccgcagtagtcactaagga 122
                                   ||||||||||||||||||||||||||||||||||||
Sbjct: 481 atatatatatatatatatatatatatatatatatatatatgccgcagtagtcactaagga 422

                                                                       
Query: 123 gcagttgattaattctcagaacctaagtgttgctctcttaaaaagaaaaaaatcttctct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcagttgattaattctcagaacctaagtgttgctctcttaaaaagaaaaaaatcttctct 362

                                                                       
Query: 183 ttaacttttgaagttcatgtttacgtatatgtatatgtatgattcttgcctgctgacatg 242
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttaacttttgaaatttatgtttacgtatatgtatatgtatgattcttgcctgctgacatg 302

                                                                       
Query: 243 tgtccagtatcttcagtggccagaagaggaagttgtatttcctggaactggagtcacagg 302
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 301 tgtccagtatcttcagtggccagaagaggaagttgtattgcctggaactggagtcacagg 242

                                                                       
Query: 303 ttctagtgtactgcaggatttcagtgctcggaactgaaggcgtctcttttataagagcca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttctagtgtactgcaggatttcagtgctcggaactgaaggcgtctcttttataagagcca 182

                                                                       
Query: 363 ccagtactcttaagtgttgagccatctctgtagcaaagggatcagtttcctttggagagg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccagtactcttaagtgttgagccatctctgtagcaaagggatcagtttcctttggagagg 122

                                                                       
Query: 423 tgcactggcaggctctgtagacatcagtggatagtcccacatacatgtactcatggtcag 482
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 121 tgcactggcaggctctgtagacatcagtggatagtcccacatgcatgtactcatggtcag 62

                                                                       
Query: 483 cataaactggattttaataattattttattagtaaatttaaattaattaaatattacata 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cataaactggattttaataattattttattagtaaatttaaattaattaaatattacata 2

            
Query: 543 c 543
           |
Sbjct: 1   c 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no047_l11.g1 MSMg01no047_l11.g1 CHROMAT_FILE:
MSMg01no047_l11.g1 PHD_FILE: MSMg01no047_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:07 2005
         (207 letters)



>mm_chr5_59885412_59886016
          Length = 605

 Score =  366 bits (189), Expect = e-106
 Identities = 199/203 (98%), Gaps = 2/203 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gatgaagtaagaactagaataagacaatgcactccaatccaagtttattttaaattgaag 64
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gatgaagtaagaactagaataagacaatgcactccaattcaagtttattttaaattgaag 264

                                                                       
Query: 65  atcattgtgtatgagaactgctaaaaattaaaataccattccaaataatatattataatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcattgtgtatgagaactgctaaaaattaaaataccattccaaataatatattataatt 324

                                                                       
Query: 125 atcatggctttttttttctccagactccctaaaagctcctttgataaatgactatatgtg 184
           |||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 atcatggcttttttt--ctccagacttcctaaaagctcctttgataaatgactatatgtg 382

                                  
Query: 185 aaataagatttgataacaactga 207
           |||||||||||||||||||||||
Sbjct: 383 aaataagatttgataacaactga 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 605
Length adjustment: 9
Effective length of query: 198
Effective length of database: 596
Effective search space:   118008
Effective search space used:   118008
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)