Query= MSMg01no047_l11.b1 MSMg01no047_l11.b1 CHROMAT_FILE:
MSMg01no047_l11.b1 PHD_FILE: MSMg01no047_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:07 2005
(583 letters)
>mm_chr5_59980880_59981862
Length = 983
Score = 888 bits (459), Expect = 0.0
Identities = 535/601 (89%), Gaps = 62/601 (10%)
Strand = Plus / Minus
Query: 5 gaattctcaatagctctagttgcctgtttatatataagaagaaactatatatctatatat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gaattctcaatagctctagttgcctgtttatatataagaagaaactatatatctatatat 542
Query: 65 gtgtgtgtgtatatatatatac-------------------------------------- 86
||||||||||||||||||||||
Sbjct: 541 gtgtgtgtgtatatatatatacatatatatatatatatatatatatatatatatatatat 482
Query: 87 ------------------------atatatatatatatatgccgcagtagtcactaagga 122
||||||||||||||||||||||||||||||||||||
Sbjct: 481 atatatatatatatatatatatatatatatatatatatatgccgcagtagtcactaagga 422
Query: 123 gcagttgattaattctcagaacctaagtgttgctctcttaaaaagaaaaaaatcttctct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcagttgattaattctcagaacctaagtgttgctctcttaaaaagaaaaaaatcttctct 362
Query: 183 ttaacttttgaagttcatgtttacgtatatgtatatgtatgattcttgcctgctgacatg 242
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttaacttttgaaatttatgtttacgtatatgtatatgtatgattcttgcctgctgacatg 302
Query: 243 tgtccagtatcttcagtggccagaagaggaagttgtatttcctggaactggagtcacagg 302
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 301 tgtccagtatcttcagtggccagaagaggaagttgtattgcctggaactggagtcacagg 242
Query: 303 ttctagtgtactgcaggatttcagtgctcggaactgaaggcgtctcttttataagagcca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttctagtgtactgcaggatttcagtgctcggaactgaaggcgtctcttttataagagcca 182
Query: 363 ccagtactcttaagtgttgagccatctctgtagcaaagggatcagtttcctttggagagg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccagtactcttaagtgttgagccatctctgtagcaaagggatcagtttcctttggagagg 122
Query: 423 tgcactggcaggctctgtagacatcagtggatagtcccacatacatgtactcatggtcag 482
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 121 tgcactggcaggctctgtagacatcagtggatagtcccacatgcatgtactcatggtcag 62
Query: 483 cataaactggattttaataattattttattagtaaatttaaattaattaaatattacata 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cataaactggattttaataattattttattagtaaatttaaattaattaaatattacata 2
Query: 543 c 543
|
Sbjct: 1 c 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_l11.g1 MSMg01no047_l11.g1 CHROMAT_FILE:
MSMg01no047_l11.g1 PHD_FILE: MSMg01no047_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:07 2005
(207 letters)
>mm_chr5_59885412_59886016
Length = 605
Score = 366 bits (189), Expect = e-106
Identities = 199/203 (98%), Gaps = 2/203 (0%)
Strand = Plus / Plus
Query: 5 gatgaagtaagaactagaataagacaatgcactccaatccaagtttattttaaattgaag 64
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gatgaagtaagaactagaataagacaatgcactccaattcaagtttattttaaattgaag 264
Query: 65 atcattgtgtatgagaactgctaaaaattaaaataccattccaaataatatattataatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcattgtgtatgagaactgctaaaaattaaaataccattccaaataatatattataatt 324
Query: 125 atcatggctttttttttctccagactccctaaaagctcctttgataaatgactatatgtg 184
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 atcatggcttttttt--ctccagacttcctaaaagctcctttgataaatgactatatgtg 382
Query: 185 aaataagatttgataacaactga 207
|||||||||||||||||||||||
Sbjct: 383 aaataagatttgataacaactga 405
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 605
Length adjustment: 9
Effective length of query: 198
Effective length of database: 596
Effective search space: 118008
Effective search space used: 118008
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
