Query= MSMg01no047_p15.b1 MSMg01no047_p15.b1 CHROMAT_FILE:
MSMg01no047_p15.b1 PHD_FILE: MSMg01no047_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:25 2005
(663 letters)
>mm_chr5_84753979_84755041
Length = 1063
Score = 1251 bits (647), Expect = 0.0
Identities = 656/659 (99%)
Strand = Plus / Plus
Query: 5 gaattcctaaggcttccactgggtgagatcaaagagcctgctaaaatcctccctgacatc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaaggcttccactgggtgagatcaaagagcctgctaaaatcctccctgacatc 264
Query: 65 tctgacccacattctcactcccatcatctcataagtatttgactaaaaacattaatgaca 124
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 tctgacccacattctcactcccatcatctcataagtatctgactaaaaacattaatgaca 324
Query: 125 atgttgaaaatatggcttagaatgaaagggaacaaaaagcaaggacaatattctgtaaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgttgaaaatatggcttagaatgaaagggaacaaaaagcaaggacaatattctgtaaaa 384
Query: 185 ctattgtagaactccaaacccccagtagagcatggtttaagctgaaagaaccaaaactca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctattgtagaactccaaacccccagtagagcatggtttaagctgaaagaaccaaaactca 444
Query: 245 tctatttttattatccttatgtgtcatacaggaaaataaacatgagggatgagctagtta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctatttttattatccttatgtgtcatacaggaaaataaacatgagggatgagctagtta 504
Query: 305 attgccagttcatggtgtttcctcctatctgaagggtatgtgcacatgtgtacacacaca 364
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 505 attgccagttcatggtgtttcctcctatctgaagggtatgtgcacatgtatacacacaca 564
Query: 365 caatcatgaacatacatacatggatacatagagcacatacatacctgcaaacacaggtgc 424
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 565 caatcatgaacatacatacatggatacatagagcgcatacatacctgcaaacacaggtgc 624
Query: 425 aaaaattcataaacacctgcatacatacatatgaatacacatgcatgcatacatgcacat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaaattcataaacacctgcatacatacatatgaatacacatgcatgcatacatgcacat 684
Query: 485 atccacccatgaatatacagtcacacacacaaaaaccactttcattttatacttgtataa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atccacccatgaatatacagtcacacacacaaaaaccactttcattttatacttgtataa 744
Query: 545 ctcctaacattggctgaaattttaaaattaagattagtttcttattgttgaataaaatag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcctaacattggctgaaattttaaaattaagattagtttcttattgttgaataaaatag 804
Query: 605 cattcttattgttgagtaaaatagaaccaacagttcaatttctttgatgttttttggta 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cattcttattgttgagtaaaatagaaccaacagttcaatttctttgatgttttttggta 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_p15.g1 MSMg01no047_p15.g1 CHROMAT_FILE:
MSMg01no047_p15.g1 PHD_FILE: MSMg01no047_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:25 2005
(621 letters)
>mm_chr5_84791044_84792062
Length = 1019
Score = 1100 bits (569), Expect = 0.0
Identities = 608/621 (97%), Gaps = 2/621 (0%)
Strand = Plus / Minus
Query: 1 cacagagaaaccgtacattgacccagcctgtttctcatcatccatgcaaactgctctaac 60
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 819 cacacagaaaccgtacattgacccagcctgtttttcatcatccatgcaaactgctctaac 760
Query: 61 tcttgggacagaggcaaaaaaaatagctgaactttaggtgttgcttgtgctgtaggatct 120
||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||
Sbjct: 759 tcttgggacagaggc-aaaaacatagctgaactttagatgttgctggtgctgtaggatct 701
Query: 121 gtctcttcagtctaagtacaggagtgatttagaaaaaaatatattatctagacttcatta 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 700 gtctcttcagtctaagtacaggagtgatttagaaaaaattatattatctagacttcatta 641
Query: 181 aaattagtgccttcaggaattaggtcaaaaaagctttgttttaagtagcaagctgttttc 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 640 aaattagtgccttcaggaattaggtcaaaaaagctttgtttcaagtagcaagctgttttc 581
Query: 241 tatgtaaagttgatttcacttaaaaaaaatagttgtcagtgtgaaatgctttttcaaaca 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tatgtaaagttgatttcactt-aaaaaaatagttgtcagtgtgaaatgctttttcaaaca 522
Query: 301 tacagtgagtgaaatgagtggttctagtgtataattttaactatatctctaaagccggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 521 tacagtgagtgaaatgagtggttctagtgtataattttaactatatctctaaagctggga 462
Query: 361 gtatgatacatgtagattattcacagcattcgaatgttttatttgactgaaccatttagt 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 461 gtatgatacatgtagattattcacagcattcaaatgttttatttgactgaaccatttagt 402
Query: 421 tttttagaaggattaataccaagacttctctgtctatgtatttcagatttcacaatcatc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 401 tttttagaaggattaataccaagacttctctgtctatgtatttcagatttcacaatcacc 342
Query: 481 actaatcacatctatatttatcatcattcttcatttgttttcctatgatacttgcaaaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 actaatcacatctatatttatcatcattcttcatttgttttcctatgatacttgcaaaat 282
Query: 541 aatattacactccgctctatatgtcattattatgagttggtataaaactaataacatcct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aatattacactccgctctatatgtcattattatgagttggtataaaactaataacatcct 222
Query: 601 attagctcatcgtttccttag 621
|||||||||||||||||||||
Sbjct: 221 attagctcatcgtttccttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1019
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1009
Effective search space: 616499
Effective search space used: 616499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
