Query= MSMg01no048_a22.b1 MSMg01no048_a22.b1 CHROMAT_FILE:
MSMg01no048_a22.b1 PHD_FILE: MSMg01no048_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:33 2005
(762 letters)
>mm_chr5_47601986_47603147
Length = 1162
Score = 1419 bits (734), Expect = 0.0
Identities = 755/766 (98%), Gaps = 8/766 (1%)
Strand = Plus / Minus
Query: 1 agagagagaagcaagggtagaatacgaatggtaaaaactctaacccaag----tccccaa 56
||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 962 agagagagaagcaagggtagaatacgaatggtaaaaactctaacccaagttttt----aa 907
Query: 57 catagtgagaaaactgcattaaaactggcttcccttgatgatcatggaagaggtttatga 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 catagtgagaaaactgcattaaaactggcttcccttgatgatcatggaagaggtttatga 847
Query: 117 tctagtcctgtgatttaatatgagcaggtccatgcttactttctcattacctgctgcacg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 tctagtcctgtgatttaatatgagcaggtccatgcttactttctcattacctgctgcacg 787
Query: 177 ggaagtggaaataacttcagctcaaagagaacaagggccaagggtaatggcaaatgtttt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ggaagtggaaataacttcagctcaaagagaacaagggccaagggtaatggcaaatgtttt 727
Query: 237 ataaaaaacaaacgtgttgctaatttgcatctgtgtctataaatgcaggactagggatgg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ataaaaaacaaacgtgttgctaatttgcatctgtgtctataaatgcaggactagggatgg 667
Query: 297 aaaaccctttatggactgaattaccttccctgacccagcaagagattctctatggttttg 356
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 666 aaaaccctttatggactgaattaccttccctgacccagcaagagattctccatggttttg 607
Query: 357 ccttccagagatctttaaattcacttttagctctgtataatatgcacggaggaacacagt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccttccagagatctttaaattcacttttagctctgtataatatgcacggaggaacacagt 547
Query: 417 ggaaacagcactttttgacctctacgtggttctgggcatcatcctcatctgagagaatgc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ggaaacagcactttttgacctctacgtggttctgggcatcatcctcatctgagagaatgc 487
Query: 477 tagaattcaggtacagcattttctctaccttcccatgtttactcatgttcactttagaca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tagaattcaggtacagcattttctctaccttcccatgtttactcatgttcactttagaca 427
Query: 537 ttctcactggccaatgcaatgatatcccttagtaaagaccttggtcatagtgtcatatat 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttctcactggccaatgcaatgatatcccttagtaaagaccttggtcatagtgtcatatat 367
Query: 597 ttagtactgtgtaaacattttctaaaatatttcagacatgaaatttcaacaaagtatcct 656
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 366 ttagtactgtgtaaacattttctacaatatttcagacatgaaatttcaacaaagtatcct 307
Query: 657 tttatagaaggaaagataacaggtgggtttatattatacacacacacacacatataattt 716
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 306 tttatagaaggaaagataacaggtgtgtttatattatacacacacacacacatataattt 247
Query: 717 gctaaaattgaagttgtgtggtcccaccctatacaaaatgactcag 762
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gctaaaattgaagttgtgtggtcccaccctatacaaaatgactcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 762
Length of database: 1162
Length adjustment: 10
Effective length of query: 752
Effective length of database: 1152
Effective search space: 866304
Effective search space used: 866304
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_a22.g1 MSMg01no048_a22.g1 CHROMAT_FILE:
MSMg01no048_a22.g1 PHD_FILE: MSMg01no048_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:33 2005
(688 letters)
>mm_chr5_47483234_47484321
Length = 1088
Score = 1266 bits (655), Expect = 0.0
Identities = 679/687 (98%)
Strand = Plus / Plus
Query: 2 tctttcagttataatgtaaatatattcggggagtaacctggaattataaattatcccctt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 202 tctttcagttataatgtaaatatattcggggagtaacctggaattataaattatcagctt 261
Query: 62 aatgagaagactgattgagtggatcaagttgtgagttctaaaacaaatggcagaaaaata 121
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aacgagaagactgattgagtggatcaagttgtgagttctaaaacaaatggcagaaaaata 321
Query: 122 aagtctgtatgtctcattatctcagttctttctgaacagaacattaactgtgtccagcga 181
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 322 aagtctgtatgtctcattatctcagttctttctgaacagaacatcaactgtgtccagcga 381
Query: 182 gtttcattgctgacagaaacaaagtaaaggggatctttatcttcttaagcccactcagac 241
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtttcattgctgacagaaacaaattaaaggggatctttatcttcttaagcccactcagac 441
Query: 242 agaatgtgtgacccagagagctctatagtctcatttttcctgtttggaataacaaagaat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agaatgtgtgacccagagagctctatagtctcatttttcctgtttggaataacaaagaat 501
Query: 302 aaaaatccaaatcataaaacatgtgggcttatgaacatggcaagatgtcttaaactaatt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaaaatccaaatcataaaacatgtgggcttatgaacatggcaagatgtcttaaactaatt 561
Query: 362 ctagcttccttccgtctcaaccatagtagccgagatcagctaaaacacgatgcttccttt 421
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 562 ctagcttccttccgtctcaaccatagtagccgagatcaggtaaaacacgatgcttccttt 621
Query: 422 tcagaactcttttccccatctactggcagggctgtgaagccttgagattttgacaagact 481
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcagaactcttttccccgtctactggcagggctgtgaagccttgagattttgacaagact 681
Query: 482 ctggcatatacaactcagaattaatcacaccaagttcaccttcagactcagtccaagggc 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctggcatatacaactcagaattaatcacaccaagttcaccttcagactcagtccaagggt 741
Query: 542 attccagagcacaagggaactaaggagcatcagtgttcagcaggcgtagaaacaaagagc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 attccagagcacaagggaactaaggagcatcagtgttcagcaggcgtagaaacaaagagc 801
Query: 602 ctttctgcttctcttttggatttaggcatttaagagatcatttctgagtacaatgctaca 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ctttctgcttctcttttggatttaggcatttaagagatcatttctgagtacaatgctaca 861
Query: 662 ccccaacccctagataaactgttccat 688
|||||||||||||||||||||||||||
Sbjct: 862 ccccaacccctagataaactgttccat 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
