Query= MSMg01no048_c22.b1 MSMg01no048_c22.b1 CHROMAT_FILE:
MSMg01no048_c22.b1 PHD_FILE: MSMg01no048_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:50 2005
(763 letters)
>mm_chr5_47602013_47603176
Length = 1164
Score = 1400 bits (724), Expect = 0.0
Identities = 745/752 (99%), Gaps = 1/752 (0%)
Strand = Plus / Minus
Query: 13 gaattcttttggctttctcc-atctgaatagagagagaagcaagggtagaatacgaatgg 71
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 964 gaattcttttggctttctccaatttgaatagagagagaagcaagggtagaatacgaatgg 905
Query: 72 taaacactctaacccaagtttttaacatagtgagaaaactgcattaaaactggcttccct 131
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 taaaaactctaacccaagtttttaacatagtgagaaaactgcattaaaactggcttccct 845
Query: 132 tgatgatcatggaagaggtttatgatctagtcctgtgatttaatatgagcaggtccatgc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 tgatgatcatggaagaggtttatgatctagtcctgtgatttaatatgagcaggtccatgc 785
Query: 192 ttactttctcattacctgctgcacgggaagtggaaataacttcagctcaaagagaacaag 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ttactttctcattacctgctgcacgggaagtggaaataacttcagctcaaagagaacaag 725
Query: 252 ggccaagggtaatggcaaatgttttataaaaaacaaacgtgttgctaatttgcatctgtg 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ggccaagggtaatggcaaatgttttataaaaaacaaacgtgttgctaatttgcatctgtg 665
Query: 312 tctataaatgcaggactagggatggaaaaccctttatggactgaattaccttccctgacc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tctataaatgcaggactagggatggaaaaccctttatggactgaattaccttccctgacc 605
Query: 372 cagcaagagattctctatggttttgccttccagagatctttaaattcacttttagctctg 431
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 cagcaagagattctccatggttttgccttccagagatctttaaattcacttttagctctg 545
Query: 432 tataatatgcacggaggaacacagtggaaacagcactttttgacctctacgtggttctgg 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tataatatgcacggaggaacacagtggaaacagcactttttgacctctacgtggttctgg 485
Query: 492 gcatcatcctcatctgagagaatgctagaattcaggtacagcattttctctaccttccca 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gcatcatcctcatctgagagaatgctagaattcaggtacagcattttctctaccttccca 425
Query: 552 tgtttactcatgttcactttagacattctcactggccaatgcaatgatatcccttagtaa 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgtttactcatgttcactttagacattctcactggccaatgcaatgatatcccttagtaa 365
Query: 612 agaccttggtcatagtgtcatatatttagtactgtgtaaacattttctaaaatatttcag 671
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 364 agaccttggtcatagtgtcatatatttagtactgtgtaaacattttctacaatatttcag 305
Query: 672 acatgacatttcaacaaagtatccttttatagaaggaaagataacaggtgggtttatatt 731
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 304 acatgaaatttcaacaaagtatccttttatagaaggaaagataacaggtgtgtttatatt 245
Query: 732 atacacacacacacacatataatttgctaaaa 763
||||||||||||||||||||||||||||||||
Sbjct: 244 atacacacacacacacatataatttgctaaaa 213
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 763
Length of database: 1164
Length adjustment: 10
Effective length of query: 753
Effective length of database: 1154
Effective search space: 868962
Effective search space used: 868962
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_c22.g1 MSMg01no048_c22.g1 CHROMAT_FILE:
MSMg01no048_c22.g1 PHD_FILE: MSMg01no048_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:50 2005
(769 letters)
>mm_chr5_47483234_47484402
Length = 1169
Score = 1408 bits (728), Expect = 0.0
Identities = 758/768 (98%)
Strand = Plus / Plus
Query: 2 tctttcagttataatgtaaatatattcggggagtaacctgcaattataaattatcacctt 61
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 202 tctttcagttataatgtaaatatattcggggagtaacctggaattataaattatcagctt 261
Query: 62 aatgagaagactgattgagtggatcaagttgtgagttctaaaacaaatggcagaaaaata 121
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aacgagaagactgattgagtggatcaagttgtgagttctaaaacaaatggcagaaaaata 321
Query: 122 aagtctgtatgtctcattatctcagttctttctgaacagaacattaactgtgtccagcga 181
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 322 aagtctgtatgtctcattatctcagttctttctgaacagaacatcaactgtgtccagcga 381
Query: 182 gtttcattgctgacagaaacaaagtaaaggggatctttatcttcttaagcccactcagac 241
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtttcattgctgacagaaacaaattaaaggggatctttatcttcttaagcccactcagac 441
Query: 242 agaatgtgtgacccagagagctctatagtctcatttttcctgtttggaataacaaagaat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agaatgtgtgacccagagagctctatagtctcatttttcctgtttggaataacaaagaat 501
Query: 302 aaaaatccaaatcataaaacatgtgggcttatgaacatggcaagatgtcttaaactaatt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaaaatccaaatcataaaacatgtgggcttatgaacatggcaagatgtcttaaactaatt 561
Query: 362 ctagcttccttccgtctcaaccatagtagccgagatcagctaaaacacgatgcttccttt 421
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 562 ctagcttccttccgtctcaaccatagtagccgagatcaggtaaaacacgatgcttccttt 621
Query: 422 tcagaactcttttccccatctactggcagggctgtgaagccttgagattttgacaagact 481
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcagaactcttttccccgtctactggcagggctgtgaagccttgagattttgacaagact 681
Query: 482 ctggcatatacaactcagaattaatcacaccaagttcaccttcagactcagtccaagggc 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctggcatatacaactcagaattaatcacaccaagttcaccttcagactcagtccaagggt 741
Query: 542 attccagagcacaagggaactaaggagcatcagtgttcagcaggcgtagaaacaaagagc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 attccagagcacaagggaactaaggagcatcagtgttcagcaggcgtagaaacaaagagc 801
Query: 602 ctttctgcttctcttttggatttaggcatttaagagatcatttctgagtacaatgctaca 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ctttctgcttctcttttggatttaggcatttaagagatcatttctgagtacaatgctaca 861
Query: 662 ccccaacccctagataaactgttccattgacatctagatttcttggcttaacttcttgga 721
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 862 ccccaacccctagataaactgttccattgacatctagatttcttggcttaagttcttgga 921
Query: 722 aacttgtaactttaggcctcttctcttcacatttccattatccctggt 769
|||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 922 aacttgtaactttaggcctcttctcttcacattttcattatccctggt 969
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 769
Length of database: 1169
Length adjustment: 10
Effective length of query: 759
Effective length of database: 1159
Effective search space: 879681
Effective search space used: 879681
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
