Query= MSMg01no048_d02.b1 MSMg01no048_d02.b1 CHROMAT_FILE:
MSMg01no048_d02.b1 PHD_FILE: MSMg01no048_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:51 2005
(756 letters)
>mm_chr5_12191197_12192350
Length = 1154
Score = 1382 bits (715), Expect = 0.0
Identities = 746/757 (98%), Gaps = 4/757 (0%)
Strand = Plus / Plus
Query: 1 tttttctgaacagattatctttagaaaaaaaaatatcatattataaaaaaaatactgcct 60
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tttttctgaacaaattatctttagaaaaaaaaatatcatattataaaaaaaatattgcct 260
Query: 61 ttggtcttcaaggcaaggaaataatgagctaatctcagcttacatgtattcaaactgggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggtcttcaaggcaaggaaataatgagctaatctcagcttacatgtattcaaactgggg 320
Query: 121 aaaaccaaatgttagtgagctgtctgagtggatatga-aacagaactctggtcataagtc 179
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 321 aaaaccaaatgttagtgagctgtctgagtggatat-ataacagaactctggtcataagtc 379
Query: 180 ctttcttaaagcaacaccttttctttggaccattgaacatttccctaagcctaggaaatt 239
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctttcttaaagcaacaccttttccttggaccattgaacatttccctaagcctaggaaatt 439
Query: 240 tgcacattatgaagaaaattatttatttagctagaaaggttaatatggctttaaagaaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgcacattatgaagaaaattatttatttagctagaaaggttaatatggctttaaagaaaa 499
Query: 300 ataatggattcggaatttgaatgtgtttttgtctataaaagtcttaaatcctttataagc 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ataatggattcagaatttgaatgtgtttttgtctataaaagtcttaaatcctttataagc 559
Query: 360 cctgagttgttagtttgtggttaaataaaacataattatctgataaatctttgtactgtg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cctgagttgttagtttgtggttaaataaaacataattatctgataaatctttgtactgtg 619
Query: 420 gtctgatttttcctgtagcaaatccaacaacctgagactaactagcacattttctggctt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtctgatttttcctgtagcaaatccaacaacctgagactaactagcacattttctggctt 679
Query: 480 ttgcccatgaggagaaattgaaagaaattgagccagcttttctgtcctcgggcagatttt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttgcccatgaggagaaattgaaagaaattgagccagcttttctgtcctcgggcagatttt 739
Query: 540 tctaaaagctgtttcagtttgctagataaggaaaaagttaaagctcttttggcattttta 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tctaaaagctgtttcagtttgctagataaggaaaaagttaaagctcttttggcattttta 799
Query: 600 cagatttaaagtcactagacaagatgaagattttttttttttgagaaggaaaacactgta 659
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 800 cagatttaaagtcactagacaagatgaagatttttttttt--gagaaggaacacactgta 857
Query: 660 ttgtttttctgttttcatatctattttaatcttgcatccatcaatctgttaataggccaa 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 ttgtttttctgttttcatatctattttaatcttgcatccatcaatctgttaataggccaa 917
Query: 720 ttgctggcgtctagtttcaaagccaatgatgtacaaa 756
||||||| ||||||||||||||||||||| |||||||
Sbjct: 918 ttgctggtgtctagtttcaaagccaatgacgtacaaa 954
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 756
Length of database: 1154
Length adjustment: 10
Effective length of query: 746
Effective length of database: 1144
Effective search space: 853424
Effective search space used: 853424
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_d02.g1 MSMg01no048_d02.g1 CHROMAT_FILE:
MSMg01no048_d02.g1 PHD_FILE: MSMg01no048_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:52 2005
(746 letters)
>mm_chr5_12225425_12226570
Length = 1146
Score = 1344 bits (695), Expect = 0.0
Identities = 733/746 (98%)
Strand = Plus / Minus
Query: 1 agagacaaattgtcttttatatcaggctttatcaactagaaacatacttaaatatagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 agagacaaattgtcttttatatcaggctttatcaactagaaacatacttaaatatagaaa 887
Query: 61 gggcatccatgaaacaactataaaggacttaagcttaggcatgaataggaagggtagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gggcatccatgaaacaactataaaggacttaagcttaggcatgaataggaagggtagagg 827
Query: 121 ctattggtaacattacactcaagtaagataaatctcacagtaaatccttttaactggaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 826 ctattggtaacattacactcaagtaagataaatctcacagtaaatccttttaactagaag 767
Query: 181 tctgattagcttatttggtatttcttcaggactgagatctaagagtaatgaaaatagagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 766 tctgattagcttatttggtatttcttcaggactgagatctaagagtaatgaaaatagggt 707
Query: 241 ctggtttccagagatttagttacagacaagtgatcatggggaaaataagaaggactactg 300
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 706 ctggtttccagagatttagttacagacaagtgatcagggggaaaataaggaggactactg 647
Query: 301 tggctttgaagaaatctcacaagatgaaattgaagaatagttgtaatggccagtattaga 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tggctttgaagaaatctcagaagatgaaattgaagaatagttgtaatggccagtattaga 587
Query: 361 gtattacatgtgacttagcagaagctaaaaaattccatatcactgaatattactcattaa 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 586 gtattacatgtgacttagcagaagctaaaaaattccatatcactgaatgttactcattaa 527
Query: 421 agattggagttctactagggtttcaaactggaaaaacttaatgtttatggtttagaataa 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 526 agattggagttctactagggtttcaaactggaaaaacttaacgtttatggtttagaataa 467
Query: 481 cctaagatcctgactgtacctgatatgactgtgatggtcatacctgctatgttggtagcc 540
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 466 cctaagatcctgactgtacctgatatggctgtgatggtcacacctgctatgttggtagcc 407
Query: 541 atttttgaaagctaatagggagatctgtaagcacaaatccctgtttgtcaggaaagatga 600
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 attcttgaaagctaatggggagatctgtaagcacaaatccctgtttgtcaggaaagatga 347
Query: 601 ccatgcccattactctgggcttttgtaggagtctgaaataattcatgtatccatttttgt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ccatgcccattactctgggcttttgtaggagtctgaaataattcatgtatccatttttgt 287
Query: 661 aaataggtatcttctcattgaaaaaaggaggatattcccgtattaatagaaaagcatggg 720
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 286 aaataggtatcttctcattgaaaaaaggaggatattccagtattaatagaaaagcatggg 227
Query: 721 tcaaaaagtanattattttatagcat 746
|||||||||| |||||||||||||||
Sbjct: 226 tcaaaaagtaaattattttatagcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 746
Length of database: 1146
Length adjustment: 10
Effective length of query: 736
Effective length of database: 1136
Effective search space: 836096
Effective search space used: 836096
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
