Query= MSMg01no048_k17.b1 MSMg01no048_k17.b1 CHROMAT_FILE:
MSMg01no048_k17.b1 PHD_FILE: MSMg01no048_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:52 2005
(650 letters)
>mm_chr5_76997864_76998913
Length = 1050
Score = 1218 bits (630), Expect = 0.0
Identities = 645/650 (99%)
Strand = Plus / Minus
Query: 1 cagcgcgctatcaacccctcgaagtgcttgtacccgcgtataaactcatcttgcatggag 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 850 cagcgcgctatcaacccctcgaagtgcttgtactggcgtataaactcatcttgcatggag 791
Query: 61 tgccacaccacctattgcaaaacagaaagtgaaggccagactgtgaggggatgactccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tgccacaccacctattgcaaaacagaaagtgaaggccagactgtgaggggatgactccat 731
Query: 121 aggcacacacggagaacaggttgtgagataggctaagaatctatagaatatggtagttag 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 730 aggcacacacggagaacaggttgtgagataggctaagaatctatagaacatggtagttag 671
Query: 181 gaatgtgcatcctgatgccaacgccctcagtccttggacttgtcatctctgtaatgccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gaatgtgcatcctgatgccaacgccctcagtccttggacttgtcatctctgtaatgccat 611
Query: 241 ttgtcctgtgagccacaaattcctatctgtaaacaaggtgtggatagtaacactcttccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttgtcctgtgagccacaaattcctatctgtaaacaaggtgtggatagtaacactcttccc 551
Query: 301 tcctgagttcaccaggggctaatctagagtacaggttagttaggccaggtctggcatgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcctgagttcaccaggggctaatctagagtacaggttagttaggccaggtctggcatgag 491
Query: 361 caagcccattgtgctttagctgttaccacataaactctcacgctcacatcagatgcagat 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 490 caagcccattgtgctttagctgttaccacataaactctcacgcccacatcagatgcagat 431
Query: 421 tggcacaattatgtgaggcagcaggaccatcattcaggaagtgcaacacttaacatttaa 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 430 tggcacaattatgtgaggcagcaggaccatcattcaggaagtgcaatacttaacatttaa 371
Query: 481 gttccattttagtcatggttcaactttttatctagaattgatggcataaagcgttgcttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gttccattttagtcatggttcaactttttatctagaattgatggcataaagcgttgcttg 311
Query: 541 aaactgtggagggagccaagaatgatccagggtctctacctacaactatgtgataatatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaactgtggagggagccaagaatgatccagggtctctacctacaactatgtgataatatg 251
Query: 601 cctaccatggagcagacatgcagaggatttcaaggcagaattccatacat 650
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cctaccatggagcagacatgcagaggatttcaaggcagaattccatacat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_k17.g1 MSMg01no048_k17.g1 CHROMAT_FILE:
MSMg01no048_k17.g1 PHD_FILE: MSMg01no048_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:52 2005
(702 letters)
>mm_chr5_76860246_76861348
Length = 1103
Score = 1278 bits (661), Expect = 0.0
Identities = 692/703 (98%), Gaps = 4/703 (0%)
Strand = Plus / Plus
Query: 1 ctcaagcaccctagtactggaaggactcattaggcgattaaaaaaa-tgaacaccttagt 59
|||||||||||||||||||||||||||||||||| ||||||||||| |||| | |||||
Sbjct: 201 ctcaagcaccctagtactggaaggactcattaggtgattaaaaaaaatgaatattttagt 260
Query: 60 gactgggaagaaatgtcccattaaaattaataaaccaacaggcatatttacccaccattc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgggaagaaatgtcccattaaaattaataaaccaacaggcatatttacccaccattc 320
Query: 120 tctcataagttaatatgagcctatcttattcgcttcctcagggagtatcccatggggtac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcataagttaatatgagcctatcttattcgcttcctcagggagtatcccatggggtac 380
Query: 180 cagcacagaaacttctggaactgcaaatctaaaatcagaccagacaataggatttccact 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcacagaaacttctggaactgcaaatctaaaatcagaccagacaataggatttccact 440
Query: 240 atccagtgattcagcaagaaaaccagctggctaagccacccccttgggaatcctgtccct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccagtgattcagcaagaaaaccagctggctaagccacccccttgggaatcctgtccct 500
Query: 300 tgtgtcaaaaaaaaaaatttttttaaaagattaccaatacataattgtcttattattcta 359
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgtcaaaaaaaaa--tttttttaaaagattaccaatacataattgtcttattattcta 558
Query: 360 tgaatttaacactagatgattatttgaacctgaaaggagccctgcaaatcaaaatccaac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgaatttaacactagatgattatttgaacctgaaaggagccctgcaaatcaaaatccaac 618
Query: 420 actaaacacgttagacattacaaaaacaggccctatatctatcttataatatctagcaga 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 actaaacacattagacattacaaaaacaggccctatatctatcttataatatctagcaga 678
Query: 480 ttttaagaaattaaaaagttaaaaaagagaagcattccattaatatttgtgtctatttat 539
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 679 ttttaagaaattaaaaagttaaaaa-gagaagcattccattaatatttgtgtctatttat 737
Query: 540 tttatttaaatatttgtgtctgagtgttctgcctgattgtatgtatgagtatcacgagca 599
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 738 tttatttaaatatttgtgtctgagtgttctgcctgaatgtatgtatgagtatcacgagca 797
Query: 600 tacaagcataccattgggtcccctggaactggagttatggatggtgatgaaccaccaggt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tacaagcataccattgggtcccctggaactggagttatggatggtgatgaaccaccaggt 857
Query: 660 aggtgacaggaattgaacctgtgtcctctacagtcctctacaa 702
||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 858 aggtgacaggaattgaacctgggtcctctacagtcctctacaa 900
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1103
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1093
Effective search space: 756356
Effective search space used: 756356
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
