Query= MSMg01no048_m03.b1 MSMg01no048_m03.b1 CHROMAT_FILE:
MSMg01no048_m03.b1 PHD_FILE: MSMg01no048_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:03 2005
(450 letters)
>mm_chr5_20795735_20796584
Length = 850
Score = 762 bits (394), Expect = 0.0
Identities = 403/406 (99%), Gaps = 2/406 (0%)
Strand = Plus / Plus
Query: 1 ctgatgggcctggagtcctccaaccaaggtacctcatacctctgtgtccaggcgtttgcc 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 ctgatgggcctggagtcctccaaccaaggtaactcatacctctgtgtccaggcgtttgcc 260
Query: 61 ttgacaccctaatcattccctattcacactttgtattgttttcttccttgtacctcctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgacaccctaatcattccctattcacactttgtattgttttcttccttgtacctcctac 320
Query: 121 aagtacgtccttattaaagttgatttcgttagagagagtatgtactgcctaattaccaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtacgtccttattaaagttgatttcgttagagagagtatgtactgcctaattaccaaa 380
Query: 181 gggggacttacctttgaacactgaaagggccttgaggtgtttaaaccaaagcttaatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggggacttacctttgaacactgaaagggccttgaggtgtttaaaccaaagcttaatgat 440
Query: 241 atttaccaacatattctcagaataacacatttcactaaaatataaaatgatgttctcagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttaccaacatattctcagaataacacatttcactaaaatataaaatgatgttctcagt 500
Query: 301 aagctgtgggaacgttataaatagccatgactccatattaacacttcctctctctctctc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagctgtgggaacgttataaatagccatgactccatattaacacttcctctctctctct- 559
Query: 361 tctctctctctctctctctctctctctctctctctctctctctctc 406
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 560 tctctctctctct-tctctctctctctctctctctctctctctctc 604
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_m03.g1 MSMg01no048_m03.g1 CHROMAT_FILE:
MSMg01no048_m03.g1 PHD_FILE: MSMg01no048_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:03 2005
(431 letters)
>mm_chr5_20920611_20921441
Length = 831
Score = 507 bits (262), Expect = e-148
Identities = 357/416 (85%), Gaps = 52/416 (12%)
Strand = Plus / Minus
Query: 1 cttgtcatctgaagggataaaagtcgtgatgtcttatagctgttcccaaattccctcgtc 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 382 cttgtcatctgaagggataaaagtcgtgatgtcttattgctgttcccaaattccctcatc 323
Query: 61 agtgcattgatattcttaaatgcctgagctctaaactgtttccttctttaaggtaaggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agtgcattgatattcttaaatgcctgagctctaaactgtttccttctttaaggtaaggtt 263
Query: 121 ctgggttcatatggtactctgaggggcctgtgtgaaacttttctctcatcaccaactcag 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 262 ctgggttcatatggtactctgagggggctgtgtgaaacttttctctcatcaccaactcag 203
Query: 181 aaatttatttttatttaaatatttttatttattataattcatccaaatatttattcattt 240
|||||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct: 202 aaatttatttttat----ata-----at-----ataattcatccaaatatttattcattt 157
Query: 241 aaatttattttattt-----------------agatttgtgttatttaaatatttatttt 283
||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 156 aaatttattttatttgcgtatttattttatttagatttgtgttatttaaatatttatttt 97
Query: 284 gtttaggtttgtgt-aggacttttaatttaaatttattttatttatatattcatttttat 342
|||||||||||||| || |||| ||||| |||||||||||| | |
Sbjct: 96 gtttaggtttgtgttag-actt---atttac--ttattttatttaga----c-------- 55
Query: 343 ttaaatttatttattttattttatttttcttgcttcttccaatgcaaaggtaggaa 398
|||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 ttaa--ttacttactttattttatttttcttgcttcttccaatgcaaaggtaggaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space: 346884
Effective search space used: 346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
