Query= MSMg01no048_n10.b1 MSMg01no048_n10.b1 CHROMAT_FILE:
MSMg01no048_n10.b1 PHD_FILE: MSMg01no048_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:13 2005
(732 letters)
>mm_chr5_72767648_72768779
Length = 1132
Score = 1369 bits (708), Expect = 0.0
Identities = 726/732 (99%)
Strand = Plus / Plus
Query: 1 cacttcttcaggaacagcagtgttcagtcatgtcccatgagatgcaactttccacatcca 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 cacttcttcaggaacagcagtgttcagttatgtcccatgagatgcaactttccacatcca 260
Query: 61 ggtagggtggggttgattgtaaaccacctgggcttcagactgccaaggccttgggagact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtagggtggggttgattgtaaaccacctgggcttcagactgccaaggccttgggagact 320
Query: 121 gtgtactcatgaggacagttggcctttctcaatattctagtctctgatgagtttccgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtactcatgaggacagttggcctttctcaatattctagtctctgatgagtttccgaaa 380
Query: 181 tagcagtttgcaaaccgaaactcattggcaacttcaactgcttccagccttccctgcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcagtttgcaaaccgaaactcattggcaacttcaactgcttccagccttccctgcttc 440
Query: 241 tctctgtgtttcagggcaacattgatgagccaccactcggttgctgggagttgaactcgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctgtgtttcagggcaacattgatgagccaccactcggttgctgggagttgaactcgg 500
Query: 301 gacctctggaagagcagtcaagcactcctaaccactgagccatctctccatcctatcaga 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 gacctctggaagagcagtcaagcactcctaaccactgagccatctctccatcgtatcaga 560
Query: 361 gcagcatttatattggcaaatgcgctcttgctccagtgatcaacttctggagtcttggaa 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 gcagcatttatattggcaaatgcgctcttgctccagtgatcgacttctggagtcttggaa 620
Query: 421 attcctaaccagctactgattgtgaggaagccccatcaacccttcttttgagcttgctca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attcctaaccagctactgattgtgaggaagccccatcaacccttcttttgagcttgctca 680
Query: 481 cagcccaaagcttagcttcaattccacctctagagagaaagctaacctgcaacagcacat 540
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 681 cagcccaaagcttagcttcaattccacctctaaagagaaagctaacctgcaacagcgcat 740
Query: 541 tccaactggggctgagcagagtaagagaacctgtgaggaatgcattcaatacccagcttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccaactggggctgagcagagtaagagaacctgtgaggaatgcattcaatacccagcttg 800
Query: 601 aaatgcttggtgcaaatctccctggctctttccttccagaggttacgtaaatacttgaag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaatgcttggtgcaaatctccctggctctttccttccagaggttacgtaaatacttgaag 860
Query: 661 tactttacagataatctgcctgtggctgatccaatcattgctagggagagtgctgtatct 720
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 861 tactttacagataatctgcctgtggctgatccaatcattgctaggaagagtgctgtatct 920
Query: 721 ttacgagtaaaa 732
||||||||||||
Sbjct: 921 ttacgagtaaaa 932
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 732
Length of database: 1132
Length adjustment: 10
Effective length of query: 722
Effective length of database: 1122
Effective search space: 810084
Effective search space used: 810084
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_n10.g1 MSMg01no048_n10.g1 CHROMAT_FILE:
MSMg01no048_n10.g1 PHD_FILE: MSMg01no048_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:13 2005
(813 letters)
>mm_chr5_72784132_72785346
Length = 1215
Score = 1259 bits (651), Expect = 0.0
Identities = 737/773 (95%), Gaps = 16/773 (2%)
Strand = Plus / Minus
Query: 56 gttatggcttggataggaactattccatcaaacactgctttaatctattagtcacaagaa 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 gttatggcttggataggaactattccatcaaacactgctttaatctattagtcacaagaa 1153
Query: 116 taacatttaccttcctccctcccctatcccaagtactcttattatcagcctggctttcta 175
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1152 taacatttaccctcctccctcccccatcccaagtactcttattatcagcctggctttcta 1093
Query: 176 gagcattggtaacagcaaactaaggtctattgattcagagttatatttctcatgcttcct 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 gagcattggtaacagcaaactaaggtctattgattcagagttatatttctcatgcttcct 1033
Query: 236 ttatt------------tcgatgtgttgtaggtcagaggccatcagactataatctgtca 283
||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1032 ttatttaagaaaccctgtcgatgtgttgtagatcagaggccatcagactataatctgtca 973
Query: 284 gcgaatgcagcctgttgctttatttttgtaagttttatggaaccacagtaacattcactc 343
|| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 972 gcaaatgcagcctgttgctttatttttgtaagctttatggaaccacagtcacattcactc 913
Query: 344 catattatattgcttgcagacgtccttactcttcagtgaacagtaaaacatatacatgca 403
||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 912 catatgatacagcttgcagacgtccttactcttcagtgaacagtaaaacagatacatgca 853
Query: 404 cactacaaaaatcttggtcctttgctaccttgatttatatagaaaagttcgcccatgtct 463
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 852 caccacaaaaatcttggtcctttgctaccttgatttatatagaaaagttcgcccatggct 793
Query: 464 cttctagaataatccacactcatttcagagcacttgattgacagctggttatcgtcattt 523
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 792 cttctagaacaatccacactcgtttcagagcacttgattgacagctggttatcgtcattt 733
Query: 524 ctgttgtggtttgcacatggcatgtactccacaggtttatctttaaaatgttccatctcc 583
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ctgttgtggtttgcacatgggatgtactccacaggtttatctttaaaatgttccatctcc 673
Query: 584 agtagtggtgctgctttagaaggttctggaaacttctggaggt-gggggttgattggaga 642
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 672 agtagtggtgctgctttagaaggttctggaaacttctggaggtggggggttgattggaga 613
Query: 643 aagtaggtccctgggagtaggtccttggtgatatcttgtccctggctccttctctgtttc 702
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aaataggtgcctgggagtaggtccttggtgatatcttgtccctggctccttctctgtttc 553
Query: 703 ctgtctttcattccttaatgaaagacagcctcca-cgcgcattcctgctattgtatgttc 761
|||||||||||| ||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct: 552 ctgtctttcatttcttaatgaaagacagcctccaccgtgcattcctgatattgtatgttc 493
Query: 762 cggccaagcacaaattaaaccactattcct-aataaatccttcatccttaaac 813
||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 492 cggccaagcacaaattaaaccactatt-ctaaataaatccttcatccttaaac 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 813
Length of database: 1215
Length adjustment: 10
Effective length of query: 803
Effective length of database: 1205
Effective search space: 967615
Effective search space used: 967615
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
