BAC Information

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BAC

Clone NameMSMg01-048P09
Chromosome5 (Build37)
Map Location 61,318,945 - 61,319,683
singlet/doubletsinglet
Overlap geneLOC666597
Upstream geneLOC546866, Cbfa2t2-ps1, LOC100041498
Downstream geneEG666610, LOC100041524, G6pd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048P09.T7 (MSMg01no048_p09.b1)MSMg01-048P09.TJ (MSMg01no048_p09.g1)
ACCAG278583AG278584
length1,2291,251
length of high quality
(start - end)		741 (75 - 815)730 (90 - 819)
definitionCHROMAT_FILE: MSMg01no048_p09.b1 PHD_FILE: MSMg01no048_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:28 2005CHROMAT_FILE: MSMg01no048_p09.g1 PHD_FILE: MSMg01no048_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTCATTGGNCCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTC
CATTCTTACAGTCCTCCCATAAAATTCATTTGCTTCTATTTTCACATGAG
TATCCCTCTTTTAAAACAAAATTTCAGCACATACATGTGTGTGTTATATG
TATTGGCATATCTGTAATCTCATATTTTATTGTCTTCTGAGGGTTTGTTT
CTAAACATCATTTCTAGTATTATATGATCATTTTGAGGTACAAAGTATTA
GCAGTTATACCTTTGAAATAGATTTTTTCCTCTAAATAAAACCATATACA
TTTAGGTATATTTCTAGAGCATGTGTATATTATAAGTTGATATGCAGTTA
AGTTTAAATTCTGACAACATAAAGCAATGCATAATGGAAAGGAGAAAATA
ATTCCCTACACACATTTAAGTGTGTTTTAGTTGTTTCATAAACAACTGGG
TGCTATTAGAGTTGTAAGATTCTAGTAGCTTGCCTGAGCGTGTATACCAG
AACACTGGAGTATGTGTGCTCCTGCACAGGCCTCATCCTTAAGGAAATGC
CTCTCCTGACTATCTCTACTCCACAGCCATCACCTGTATGACAGCTCAGC
TAGAGTGAGCTACACAAAAGCATCTCCCTACTTATGCTGGAAATATAACA
TGGTTCACTGTCTATAGATTTTTTTAAAGTTAATTAAAGCTTCTGTGGTT
CCATACATACAACCACCACATTGTACTCTAATGATGGTCAAAAGACGAAG
TTTCATATGACTCCTCCCAGCTTTCTGTATCTTTACATTTTGCCTGCCCA
CTCATTTCTGATGNTTATTAAACCTTTAGTGNACAAGGACCGTAGAGCTA
TTCCCTGTGGAGCTTACCCAACTCGTCAACATGCTGAGAATTAGGGGCTT
TCCATTAACACTGGGTACTTAACGATACAAGGAAGTTTATCTGATTTAGG
TATCAACATTTAATAATTTATTTTAATAAAGAATTTTTTAGAAAAAGTAT
TTTTTTTTGTTTTAAGGCCCCTTTAAATCCTTTTTGGCCTCTCAAAAATT
TTATATTAAAAAAAAAAAAACCTCCCCCGTTTCCCCCATATATTTTTCAA
CTTTTGGGCTATGTGTTTTTTTCCATTATTGTAAAAAATTGTACTAAACA
CTCTTTTTTTCTTAAAAAAAAATTTTATTTGTTCATTTTTTTCTTTATAA
GACCCCTCTTTCTTATATTTTTTATAAGT

CGAATTTTNNNNNAATGAGGTGAGGCTGGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTAAACTGAGGAATACCGAAT
GGCAGAGAAGCACCTGACCCAATGTTCAACATCCTCAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGAATCCACCTCATACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATAAGTCTGGCGGTTGCTCAGAAAATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAAAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAATTGTGGTACCTCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGACGTAACACACTCACAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCCAAAACTAGGATACCCAAGATATAAGATACAA
TTTGTTAAACACATGAAACTCAAGAAGAATGAAGACTGAACTGTGGACAC
TATGCCCCTCCTTAGAATTGGGAACAAATCACCCATGGAAGGAGTTACAG
AGACAAAGTTTGTAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCA
TATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCA
TACACTAGCAAGATGTTATCGAAAGGACCCAGATGTAGCTTGTCTTCTTG
TGACCATATGCCAGGGCCTATCAAACACAGAAAGTGGATGCTCACAGTCA
GCTAATGGATGGATCCCAGGGCTCCCCATGGTGGGAGCTTAAAAAAAAAA
ACCCAGGGGCTTAAGGGTTCTGCAACCCCTTAAGGGGGAAACAAAATTTT
TAAATTATCCTCTACCCCCGGAACTCTTGTACCTAACTGGGTAAGTGATC
CAAAAAAAGTCCATAATCGGCCTCCCTGGGAAAAAAAAGGCCCCCGTGGT
CTTTGCTAAATTTTTATTTCCCCCATACAGAGGGAAGCCTCTTGGCCAAA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_p09.b1 MSMg01no048_p09.b1 CHROMAT_FILE:
MSMg01no048_p09.b1 PHD_FILE: MSMg01no048_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:28 2005
         (741 letters)



>mm_chr5_61318745_61319885
          Length = 1141

 Score = 1400 bits (724), Expect = 0.0
 Identities = 736/740 (99%), Gaps = 2/740 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatttgcttctattttcacatgagtatccctctttt-aaaacaaaatttcagcacata 59
           ||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct: 201 ttcatttgcttctattttcacatgagtatccct-ttttcaaaacaaaattttagcacata 259

                                                                       
Query: 60  catgtgtgtgttatatgtattggcatatctgtaatctcatattttattgtcttctgaggg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 catgtgtgtgttatatgtattggcatatctgtaatctcatattttattgtcttctgaggg 319

                                                                       
Query: 120 tttgtttctaaacatcatttctagtattatatgatcattttgaggtacaaagtattagca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttgtttctaaacatcatttctagtattatatgatcattttgaggtacaaagtattagca 379

                                                                       
Query: 180 gttatacctttgaaatagattttttcctctaaataaaaccatatacatttaggtatattt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gttatacctttgaaatagattttttcctctaaataaaaccatatacatttaggtatattt 439

                                                                       
Query: 240 ctagagcatgtgtatattataagttgatatgcagttaagtttaaattctgacaacataaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctagagcatgtgtatattataagttgatatgcagttaagtttaaattctgacaacataaa 499

                                                                       
Query: 300 gcaatgcataatggaaaggagaaaataattccctacacacatttaagtgtgttttagttg 359
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 500 gcaatgcataatggaaaggagaaaataattccctacacacttttaagtgtgttttagttg 559

                                                                       
Query: 360 tttcataaacaactgggtgctattagagttgtaagattctagtagcttgcctgagcgtgt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttcataaacaactgggtgctattagagttgtaagattctagtagcttgcctgagcgtgt 619

                                                                       
Query: 420 ataccagaacactggagtatgtgtgctcctgcacaggcctcatccttaaggaaatgcctc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ataccagaacactggagtatgtgtgctcctgcacaggcctcatccttaaggaaatgcctc 679

                                                                       
Query: 480 tcctgactatctctactccacagccatcacctgtatgacagctcagctagagtgagctac 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcctgactatctctactccacagccatcacctgtatgacagctcagctagagtgagctac 739

                                                                       
Query: 540 acaaaagcatctccctacttatgctggaaatataacatggttcactgtctatagattttt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 acaaaagcatctccctacttatgctggaaatataacatggttcactgtctatagattttt 799

                                                                       
Query: 600 ttaaagttaattaaagcttctgtggttccatacatacaaccaccacattgtactctaatg 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttaaagttaattaaagcttctgtggttccatacatacaaccaccacattgtactctaatg 859

                                                                       
Query: 660 atggtcaaaagacgaagtttcatatgactcctcccagctttctgtatctttacattttgc 719
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 atggtcaaaagacgaagtttcatatgactcctcccagctttctgtatctttacattttgc 919

                               
Query: 720 ctgcccactcatttctgatg 739
           ||||||||||||||||||||
Sbjct: 920 ctgcccactcatttctgatg 939


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 741
Length of database: 1141
Length adjustment: 10
Effective length of query: 731
Effective length of database: 1131
Effective search space:   826761
Effective search space used:   826761
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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