BAC Information

Click to search

BAC

Clone NameMSMg01-049I19
Chromosome5 (Build37)
Map Location 46,505,838 - 46,506,380
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049I19.T7 (MSMg01no049_i19.b1)MSMg01-049I19.TJ (MSMg01no049_i19.g1)
ACCAG278963AG278964
length1,2541,312
length of high quality
(start - end)
545 (89 - 633)327 (87 - 413)
definitionCHROMAT_FILE: MSMg01no049_i19.b1 PHD_FILE: MSMg01no049_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:41 2005CHROMAT_FILE: MSMg01no049_i19.g1 PHD_FILE: MSMg01no049_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATCCCTNNNNCCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGGAAATAAAATAGGCCTGTTACTTATATGACCCAGTGAC
CAGGGATAGCTGTGTTCACTTCTGCAATTTGTCTTTCCCTTGCGTTCACT
ACGGTCATCTGGGTTTAATATCCCAGGCTGTGGGAAATGAAAGGCAGTTC
GTATTTTTTTTTCCTTGAGATTCTCAAATTTGAATTTTCAGCTGTGTATG
TTCTTGCTGCACATCTGAAATTACAGCAGGATGAACGTGCACTGTCACCA
GCCTGGCCAAAGGCTGACTTCAAGACCTGCAGAGAAAGTTCCCTGAGGGG
GTGGGCATGAAATGTCTCTGCAGGAGAGATTAAATGGTTTAATAATGTCC
TATTAAACCATTGCTTCCAAACAAAACCGAGCCTTTCAGTAACACTTGCC
ACCACGAAGCCCTCATTTAAGTGATTTTAATCTCAGATAAAGATTTTTCT
ATTAGAAGACGAGGTGTTAGCTACAGTATCACTTCTTTGCCTTTTGCGGG
TGAGGGGTGCTAAGTTTTGACTAGATCCTCATAAAACAATGACTGCTTAT
GGTAGTGGTGGAAAGTGAATACATTTTTGTGGTTATGTGCAAATACATAA
TAAAGTAAATAATAATAAAATCTACCGAAGACATGTGCCCCATACCGCCA
ATCTGCTATGAATTGTGATCGATGACTGCTTTAATTCTCCTCTCATTATC
TAAATCTAATGCATGATAATGACCGAACCAAGTATTACCAGTTTCCATCC
CTTTCTTCCAATTTATACTCTTCTTCTGTCCCAGTGAAATAACCTTTTAT
CTATCCATTTTACCATTTCCTTGTCCGATAATTCCAATTTTATCTCTCCC
ATATAAAACTTATCTTCAATTATCCACCCCTTGTTTGTTTTATATTTCCA
ATAATATTATTTAATAATCATTTTATATCCCCTTTTCTCTTTTCTTTATG
AAGTAATTTAATTTTATTACCCCCCCCCGTTATTTTTGTTATTATTTATA
AAATCTATAATTTGTAATTATTAATACATATTTTTCAAAGTAAATAATCA
TTTGATTTCTCTAAATAAATAATTTACCTTCTAACAATAATCTTTATATA
ATTTATTCTATACTTGATTAATAACTAATAATTCTCAATTATGATTCTTT
TATACAGTATCTATCCCGATACATTACTACATCTAACACTTANTATATCN
CTTT
CCACCCCTTTTTNTAACATGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTTTCAGGTAACAGGCAACATAAG
CTTCTAGTGGAAGATGCCATGAGGGGTCAGTAGGGCACCATTCTTGTTTG
ATTTCTGTTGCTCTAATAAAAACACCTTGACCCAAAGCAAATTTGGAGGA
AATGGTTTATTTGGCTTACAACTCCAGGTCACAGTATATATGGAAGAAAG
TCAAGGCAGGAGCTCAAGGCAGGAACATGAAGGCAGACACTTCTATTCCT
CAAGCATTACCCCTGACCACAGAAATGTTGGCAGTTTTATAGAAGGATAT
TTTTTTAAGAAAAAAAAAACTTGTATAAACAAGTAACACAAATACAAAAC
AGAACAAGTAGTATGTCCATATCTAGATGTATTCTAGGACAAATATCAAT
ATTAGAAGGGGTACAAAAAGAAAAAACACACAAAAGTATGATTAGTTATC
AGTCAATCAACCCATGCCTGTATATACTCATATCAAAACAAAATTCGTGA
ACAAGACAAACACCTAGAAAGATTTCTCTTTAAAACTGTATTCAGAACTG
AATATGAAATAATATCTTTAGGAAGGCGAGCCATAGCTCAAATTGTAAGA
AACTTCCTCCCAAACACAAGAATCGTAGTTCAATCCCAAGAATTTCACAG
TACAAAATAACTCCTGGATACAGTGGCAAGCACAGGTAGCGCTACTACTA
AAAAGGTAGAAAGGTGGATCAAAGGAAAACACAGGTCAGTTGCCACAGCC
AGCTTACCAAATTCCAATGCAGTGAAAGGCCTTGTCCAAGGTGGAAACTC
CAAGTTAGCATCTACCTCTCCTTTGCATGCACAATATCGGGTGCAATTGC
ACCCAACCCACTTTTTTTCTATAAGCACATCTCTGGGGGGCTTCTTATAG
GTGACTTACCATAACTCCTTTTAAATGAATTTATAAACTTGGTTTAAATC
CTTTAATTACACACTTTGCCATTGCAGAAATCACAGATAGGTGCAATATG
TTTTAAAGAATGGGTTCCTTTTCAAGTGATTTAAGTATAATTGATTAATT
TTTTTTGATTCTATATAACCTTCTTTTAAAATATTTGGGAAAATAAACAA
ATTAATATCTCTTATATTCTTTATAAATGATTGTTTATGGGNTATATTAA
TAATCCCTGTTTCCTTGGTATTCTAAACAATAATACTGTCTATATTATTA
TACCCCACATTATTTTCTGAATTAATATATTATATAATATATCCTGATAA
ATATATATTNTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_i19.b1 MSMg01no049_i19.b1 CHROMAT_FILE:
MSMg01no049_i19.b1 PHD_FILE: MSMg01no049_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:41 2005
         (545 letters)



>mm_chr5_46505638_46506581
          Length = 944

 Score =  967 bits (500), Expect = 0.0
 Identities = 533/544 (97%), Gaps = 1/544 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacccagtgaccagggatagctgtgttcacttctgcaatttgtctttcccttgcgttca 60
           ||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 201 tgacctagtgaccagggatagctgtgtttatttctgcaatttgtctttcccttgcgttca 260

                                                                       
Query: 61  ctacggtcatctgggtttaatatcccaggctgtgggaaatgaaaggcagttcgtattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ctacggtcatctgggtttaatatcccaggctgtgggaaatgaaaggcagtttgtattttt 320

                                                                       
Query: 121 ttttccttgagattctcaaatttgaattttcagctgtgtatgttcttgctgcacatctga 180
           ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ttt-ccttgagattctcaaatttgaatttccagctgtgtatgttcttgctgcacatctga 379

                                                                       
Query: 181 aattacagcaggatgaacgtgcactgtcaccagcctggccaaaggctgacttcaagacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aattacagcaggatgaacgtgcactgtcaccagcctggccaaaggctgacttcaagacct 439

                                                                       
Query: 241 gcagagaaagttccctgagggggtgggcatgaaatgtctctgcaggagagattaaatggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcagagaaagttccctgagggggtgggcatgaaatgtctctgcaggagagattaaatggt 499

                                                                       
Query: 301 ttaataatgtcctattaaaccattgcttccaaacaaaaccgagcctttcagtaacacttg 360
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttaataatgtcctattaaaccacagcttccaaacaaaaccgagcctttcagtaacacttg 559

                                                                       
Query: 361 ccaccacgaagccctcatttaagtgattttaatctcagataaagatttttctattagaag 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 560 ccaccacgaagccctcatttaagtgattttaatctcagataaagagttttctattagaag 619

                                                                       
Query: 421 acgaggtgttagctacagtatcacttctttgccttttgcgggtgaggggtgctaagtttt 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 620 acgaggtgttagctacagtatcacttctttgccttttgggggtgaggggtgctaagtttt 679

                                                                       
Query: 481 gactagatcctcataaaacaatgactgcttatggtagtggtggaaagtgaatacattttt 540
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 680 gactagatcctcataaaacaatgactgcttatggtagtggtggaaaatgaatacattttt 739

               
Query: 541 gtgg 544
           ||||
Sbjct: 740 gtgg 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 944
Length adjustment: 10
Effective length of query: 535
Effective length of database: 934
Effective search space:   499690
Effective search space used:   499690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)