Query= MSMg01no049_m16.b1 MSMg01no049_m16.b1 CHROMAT_FILE:
MSMg01no049_m16.b1 PHD_FILE: MSMg01no049_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:10 2005
(486 letters)
>mm_chr5_65466248_65467132
Length = 885
Score = 833 bits (431), Expect = 0.0
Identities = 470/485 (96%), Gaps = 7/485 (1%)
Strand = Plus / Plus
Query: 5 gaattctgaggtttgtcggctgccctt--t-aagcacagataccagatatactacagctc 61
|||||||||||||||||||||| || | |||||||||||||||| ||||||||||||
Sbjct: 205 gaattctgaggtttgtcggctg---ttcatcaagcacagataccagacatactacagctc 261
Query: 62 tcctaggacagaatctttctagtgcccctttctagtgtcccaagtcatgtctctcacaac 121
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 262 tcctaggacagaatctttctagtgtccctttctagtgtcccaagtcatgtctctcacaac 321
Query: 122 ccagacataccacctctatctccgattatggttgagtcccataaaaatacattttgatag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccagacataccacctctatctccgattatggttgagtcccataaaaatacattttgatag 381
Query: 182 gaaaactaaacacatagaaaggttaataccctttcaggttgcattgtttcagcaacaaaa 241
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaaaactaaatacatagaaaggttaataccctttcaggttgcattgtttcagcaacaaaa 441
Query: 242 ttcttcagcaactcaacttccggtgacatttggttaatgtcacagctctttcttaatttt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 442 ttcttcagcaactcaacttccggtgacatttggttaatgtcacagctctttcttaatgtt 501
Query: 302 ttttgtatagataccaaagttctcccactccctctaacctcctttcaaacttacgtttta 361
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 502 ttt-gtatagataccaaagttctcccattccctctaacctcctttcaaacttacgtttta 560
Query: 362 catccgtttctaggcgcaagaaaatgtgagcaccattgttcgtacttttcataaatctac 421
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 catccgtttctaggcgcaagaaaatgtgagcacaattgttcgtacttttcataaatctac 620
Query: 422 aagtgtggttgagagactttttcctggccaaatcctcatcgacagctgaggcttttccag 481
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 621 aagtgtggttgagagactttttcctggccagatcttcatcgacagctgaggcttttccag 680
Query: 482 gacgg 486
|||||
Sbjct: 681 gacgg 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 885
Length adjustment: 10
Effective length of query: 476
Effective length of database: 875
Effective search space: 416500
Effective search space used: 416500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no049_m16.g1 MSMg01no049_m16.g1 CHROMAT_FILE:
MSMg01no049_m16.g1 PHD_FILE: MSMg01no049_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:10 2005
(337 letters)
>mm_chr5_65616207_65616943
Length = 737
Score = 617 bits (319), Expect = 0.0
Identities = 328/331 (99%)
Strand = Plus / Minus
Query: 6 taaaaggagagaaaaataggaagaggatggagattgtacagtaagaattagaacccgtcc 65
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 536 taaaaggagagaaaaataggaagaggatggagattgtaaagtaagaattagaacttgtcc 477
Query: 66 gtgctctgccttccagaagccaatacgtacatcagttccgtagatgaggaaatcactagt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gtgctctgccttccagaagccaatacgtacatcagttccgtagatgaggaaatcactagt 417
Query: 126 tagggcgtggcataaaatccggcacttatcatccactgctggaaagagccgagtctcacg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tagggcgtggcataaaatccggcacttatcatccactgctggaaagagccgagtctcacg 357
Query: 186 ctcttcctgagcgtccaacatttcattttctatctaaaacataaagatgtttcatttagg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctcttcctgagcgtccaacatttcattttctatctaaaacataaagatgtttcatttagg 297
Query: 246 ggttcattgatttatctaagtaaatcaggtgtacagctagggaaagtgtctttttctcaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ggttcattgatttatctaagtaaatcaggtgtacagctagggaaagtgtctttttctcaa 237
Query: 306 gttcaactactcccttaggccagctgcacaa 336
|||||||||||||||||||||||||||||||
Sbjct: 236 gttcaactactcccttaggccagctgcacaa 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space: 238784
Effective search space used: 238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
