BAC Information

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BAC

Clone NameMSMg01-052D20
Chromosome5 (Build37)
Map Location 23,171,350 - 23,171,793
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2
Downstream genePus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052D20.T7 (MSMg01no052_d20.b1)MSMg01-052D20.TJ (MSMg01no052_d20.g1)
ACCAG280780AG280781
length707703
length of high quality
(start - end)
445 (69 - 513)434 (67 - 500)
definitionCHROMAT_FILE: MSMg01no052_d20.b1 PHD_FILE: MSMg01no052_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:48 2005CHROMAT_FILE: MSMg01no052_d20.g1 PHD_FILE: MSMg01no052_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TTCACATATTCATATAGTGCACTTTACAAGAATGTTCAAACTGCATAGCA
ACTGATAGTTATAAGATGGACTACGAAGCTGTGACTGTCAGCAGAACTCA
CACCTCTTTCTAGCTTACGGGCTCCTGTGTGTCCTTTGTTTATGCAGTGG
CTAACACCTTCATATCCCACTAAGGAGGCTGCAGCTTTAAGGCCCCTCCC
TATCTTCAAGGCCGATATTCAGGTTCTGGGAGGAAGAACAATCACACCTT
TAAGGGTTCCTAGGAGGTTAAAAGGCAGAGCAGCTCTGAAACTTACTCCT
TACCCACTGTTTGGTTTCTCAGCATGCTTCACCTATTTGAAATGCATTGA
AAAATAGGCTTATAAATTATTTAATATGCTTCTTTCCAAAAAACAGAAAC
CAAACTCTCAATGTGGGTTGTACCCTTCCAGGTTCAGGCTTATATTTCCA
AGGGTGAATCATAAAAGATACCGCTGCCTCCTTCTGTCTCAACACTCCCA
AACAAAGGTAGCCAACTAAGTACAAAGACACTCAAAGAACAATCCCACAG
TGGAGTGTAAAGCCTCCCCTGTCAAGAGGCAGGAAGAACATCACCCAGTC
AAGTTCCAGGAGAGATCTAAAACCAAATCTGCTTAGGTTACTTTCCACTC
CAAGTAA
TGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACCAGAGCAGAAGGAGTAAGAAAGTCAGATATAA
TAGAATAATTATGCACACCAAGACCAACTGAAAAGCAGTCACACACAAAT
GAAATCTAGATAGCTGTTGTCAAGGGCTAAGGTTAGGAGAAATGGGAACA
ACTGTTGTTACAAAGAGTTGTCGCAGGCTACTGAGATATCTCTATCCCAT
CCTTGTCCCCAGCAAATTCTGAATATCATAAGGAAATACATTAAAACTCT
ATACTCGGGCTGGAGAGATGGATCAAAGGTTAAGAGCACCAACTGCTCTT
CCGGAGGTCCCAGCAACCACATGGTGGCTTACAACCATCTGTAATGAGAT
CTGATGCCCTCTTCTGGTGTGTCTGAAACAGCAACAGTGTACTTACATAA
AATAAAAATAAAATAAACCTCCTTACTCCATTAAATTGGAAAACCTGAAA
GAAGTAGATGAGCTTAGTACAAGCCCACTGCACGCGCTAGCTTTTCTATA
GATGTGGCATACCTGGGACAGTTGAGGTATTTAACAAAATAATTCTGTGG
CAATTTTTATTTTTATCCTCATTTTGCTGATAAAGAAATTGAAGCTAAAG
GATTTTAAATTATTTTTCCTTAGGAAGCATATTTTGTTCCCGTGTGATAT
AAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_d20.b1 MSMg01no052_d20.b1 CHROMAT_FILE:
MSMg01no052_d20.b1 PHD_FILE: MSMg01no052_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:48 2005
         (445 letters)



>mm_chr5_23171150_23171993
          Length = 844

 Score =  837 bits (433), Expect = 0.0
 Identities = 442/445 (99%), Gaps = 1/445 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcactttacaagaatgttcaaactgcatagcaactgatagttataagatggactacgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcactttacaagaatgttcaaactgcatagcaactgatagttataagatggactacgaag 260

                                                                       
Query: 61  ctgtgactgtcagcagaactcacacctctttctagcttacgggctcctgtgtgtcctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgactgtcagcagaactcacacctctttctagcttacgggctcctgtgtgtcctttg 320

                                                                       
Query: 121 tttatgcagtggctaacaccttcatatcccactaaggaggctgcagctttaaggcccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatgcagtggctaacaccttcatatcccactaaggaggctgcagctttaaggcccctc 380

                                                                       
Query: 181 cctatcttcaaggccgatattcaggttctgggaggaagaacaatcacacctttaagggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctatcttcaaggccgatattcaggttctgggaggaagaacaatcacacctttaagggtt 440

                                                                       
Query: 241 cctaggaggttaaaaggcagagcagctctgaaacttactccttacccactgtttggtttc 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctaggaggg-aaaaggcagagcagctctgaaacttactccttacccactgtttggtttc 499

                                                                       
Query: 301 tcagcatgcttcacctatttgaaatgcattgaaaaataggcttataaattatttaatatg 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcagtatgcttcacctatttgaaatgcattgaaaaataggcttataaattatttaatatg 559

                                                                       
Query: 361 cttctttccaaaaaacagaaaccaaactctcaatgtgggttgtacccttccaggttcagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttctttccaaaaaacagaaaccaaactctcaatgtgggttgtacccttccaggttcagg 619

                                    
Query: 421 cttatatttccaagggtgaatcata 445
           |||||||||||||||||||||||||
Sbjct: 620 cttatatttccaagggtgaatcata 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 844
Length adjustment: 10
Effective length of query: 435
Effective length of database: 834
Effective search space:   362790
Effective search space used:   362790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)