Query= MSMg01no052_n14.b1 MSMg01no052_n14.b1 CHROMAT_FILE:
MSMg01no052_n14.b1 PHD_FILE: MSMg01no052_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:35 2005
(494 letters)
>mm_chr5_56710772_56711664
Length = 893
Score = 909 bits (470), Expect = 0.0
Identities = 488/494 (98%), Gaps = 1/494 (0%)
Strand = Plus / Plus
Query: 1 tcagttcttttaatactcataatgctcttgagtccaactttttaattacctttaagtagc 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tcagttcttttaatactcataatgctcttgagtccaactttttaattagttttaagtagc 260
Query: 61 taagtcccaaaaaagtcttttttcattttttttagtggtccttctttttctaattcaaag 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 taagtcccaaaaaagtcttttttcattttttt-agtggtccttctttttctaattcaaag 319
Query: 121 aaaatatcatttcatgtcatattactacaaaataaatcatgctaccttcatgaaaaatag 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 320 aaaatatcatttcatgtcatattactagaaaataaatcatgctaccttcatgaaaaatag 379
Query: 181 ttatacctgtttcatcatagataattaaatacataaagtcaagtggaaaagctattgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttatacctgtttcatcatagataattaaatacataaagtcaagtggaaaagctattgttt 439
Query: 241 gtgctaattttattaaacataacatgggattatatttctcagaaagattatatttcttta 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 440 gtgctaattttattaaacataacatgggattatatttcccagaaagattatatttcttta 499
Query: 301 ataaaattgcacaagtttttaccaccagtaaaaagctttaaaatgactaattatcattca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ataaaattgcacaagtttttaccaccagtaaaaagctttaaaatgactaattatcattca 559
Query: 361 tttaaaatttataaagttctatgatgaactcataacctgaatatataacacaaaattcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttaaaatttataaagttctatgatgaactcataacctgaatatataacacaaaattcat 619
Query: 421 ggggagatgtacaaatgtagtttattaaagtaagacatattaaaaaaaggaagagatttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggggagatgtacaaatgtagtttattaaagtaagacatattaaaaaaaggaagagatttt 679
Query: 481 aaaaataattatgt 494
|||||||||||||
Sbjct: 680 taaaataattatgt 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 893
Length adjustment: 10
Effective length of query: 484
Effective length of database: 883
Effective search space: 427372
Effective search space used: 427372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_n14.g1 MSMg01no052_n14.g1 CHROMAT_FILE:
MSMg01no052_n14.g1 PHD_FILE: MSMg01no052_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:35 2005
(241 letters)
>mm_chr5_56835618_56836257
Length = 640
Score = 371 bits (192), Expect = e-107
Identities = 236/266 (88%), Gaps = 26/266 (9%)
Strand = Plus / Minus
Query: 1 catgggaagaaaggaaaagggacaaaaacagtatgaaaataggtttctagatcattatat 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 336 catgggaagaaaggaaaagggacaaaaacagtttgaaaataggtttctagattattatat 277
Query: 61 aggagacaataaagatgtatgtcttggtttccatctcaactcctttaaaatacacaaatc 120
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 276 aggagacaataaagatgcatgtcttggtttccatctcaactcc-ttaaaatacacaaatc 218
Query: 121 atataaagtaactgca----------------------ac---aatgtattctctcgatg 155
|||||||||||||||| || |||||||||||||||||
Sbjct: 217 atataaagtaactgcaatatgatataatatgatatgatacaataatgtattctctcgatg 158
Query: 156 gttgtaagtgtgcatgtaacatctatattagtaatatcatgtaatattattttggtagat 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 157 gttgtaagtgtgcatgtaacatctatattagtaatatcatgtaatattattttggaagat 98
Query: 216 gatgaggtctagaggcttagtgtctt 241
||||||||||||||||||||||||||
Sbjct: 97 gatgaggtctagaggcttagtgtctt 72
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 640
Length adjustment: 9
Effective length of query: 232
Effective length of database: 631
Effective search space: 146392
Effective search space used: 146392
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
