BAC Information

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BAC

Clone NameMSMg01-052P16
Chromosome5 (Build37)
Map Location 134,391,787 - 134,392,075
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039731, LOC666038
Downstream geneLOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052P16.T7 (MSMg01no052_p16.b1)MSMg01-052P16.TJ (MSMg01no052_p16.g1)
ACCAG281325AG281326
length707701
length of high quality
(start - end)
295 (72 - 366)290 (68 - 357)
definitionCHROMAT_FILE: MSMg01no052_p16.b1 PHD_FILE: MSMg01no052_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:45 2005CHROMAT_FILE: MSMg01no052_p16.g1 PHD_FILE: MSMg01no052_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGNAAATCGGCGGAATTCC
TCAGGCCTTTCATCCAGACAGTCTGGCAGAACTGGCAAGGTCTAGGTCCA
GTGAGAGACCCTATCTAACCATTCAAGTGCGAGAGTTTTTCGGTTGCTTT
CCCCAGGTGGTGTCTGCAGCAGGAGGGTCTTACTATCTGGATGTGATGGG
TGATTACGTGCAGCGGCTGTAGTCCATATGACTTGAGGAGTCTCTGGGAT
TCCCTAGCTACGTCATAGCAGCTGCGGTTGCCTACACAAGACCTAAACAT
GACCAAGTCAGTCAATATTCTAGTGGGAGCAGGGGAGGCACTCATGAGCT
CTCACCTCTAACTAAGAAGCTTCATACAGGTAAAGGCTGAAGGGAGAGTC
AGGGGTTTTATTTTTCAGCAATGTGACCCATGGTAGCTTGTTCCTGCTCC
CACTAGATGGCCCTGGACCGGTGAGCACACAGAGGACACTAATTGTACAC
AGTGTGTTGAGGAGGAAGAGAAGGAGGAACAAGAGGAGGAGGGGGAGGAG
GAAGAAGAGGCAGTGCCAGCAACAGAGAAGGAGGAGAAAGAGAAAAAGAA
CAAGGAGGTGGATGAGAATGAGATACAAGACCTACCGTTGGGCAAAGAGA
TGTGTAAGGACTTTGGTTGGCAGGCTTTGCATACTATCTAAATACATTAC
ATTTTTA
CAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTGCCTTTACTTGCTTGGATCTGGCATTGCTT
TAAAGTGGATGAGCTCATGGTTCCTGTGCCAGGCAGAGAACTCACTTCCT
GGGCAACCAAACTCCTCCACCTGCAGTGCTAGAGAGTCCTAATGTGCTTG
CCTGCCCAGTGGGATTTTTTTTTTCACATGTCCTCGGTGTAGTTCTGCCT
GGAACTTGGAATCCATATGATAAACAACAGTTGGTCATGAGTTACTGAAG
CCTACTGGCTAACTATGGAACAGAATGCTTGCCAAAGGAGGCTTTTGATT
GAGCCTAGGCCAATCACGACGAAAATGGGCAAGTCAGTTGCTGTTTTGTC
TCCAACTTGGCTCTGAGGTTAGGAGATCCATATCAGGCAAGCCTGCAGTG
ATTCTTCACACCTTGATCTGAAGGCAACCAGGAGGAGAGAGACTGCCATC
TGTAGGCAGCCAGAAGGAGGGCCTTATTCCATACTGGGAAAACCTTCCAG
ATTCAGTTCCTGATTCCTGAGTGAAGCTCACATGGCTTCTGGGTGGCAGG
TGCCATCTCATGCCCTAACTTATTGAATTCTCCCATGAAACCTGTGACAA
ACATGGAACTTGGCTTCTTATTTCAAAGTTTTAAAATTTAAATTGAGATT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_p16.g1 MSMg01no052_p16.g1 CHROMAT_FILE:
MSMg01no052_p16.g1 PHD_FILE: MSMg01no052_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:45 2005
         (290 letters)



>mm_chr5_134391587_134392275
          Length = 689

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%), Gaps = 1/290 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgcctttacttgcttggatctggcattgctttaaagtggatgagctcatggttcctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 attgcctttacttgcttggatctggcattgctttaaagtggatgagctcatggttcctgt 430

                                                                       
Query: 61  gccaggcagagaactcacttcctgggcaaccaaactcctccacctgcagtgctagagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gccaggcagagaactcacttcctgggcaaccaaactcctccacctgcagtgctagagagt 370

                                                                       
Query: 121 cctaatgtgcttgcctgcccagtgggattttttttttcacatgtcctcggtgtagttctg 180
           ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 369 cctaatgtgcttgcctgcccagtggga-tttttttttcacatgtcctcagtgtagttctg 311

                                                                       
Query: 181 cctggaacttggaatccatatgataaacaacagttggtcatgagttactgaagcctactg 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 310 cctggaatttggaatccatatgataaacaacagttggtcatgagttactgaagcctattg 251

                                                             
Query: 241 gctaactatggaacagaatgcttgccaaaggaggcttttgattgagccta 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gctaactatggaacagaatgcttgccaaaggaggcttttgattgagccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space:   191080
Effective search space used:   191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)