BAC Information

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BAC

Clone NameMSMg01-053B08
Chromosome15 (Build37)5 (Build37)
Map Location 29,210,528 - 29,210,92937,133,766 - 37,134,144
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053B08.T7 (MSMg01no053_b08.b1)MSMg01-053B08.TJ (MSMg01no053_b08.g1)
ACCAG281401AG281402
length726702
length of high quality
(start - end)
406 (51 - 456)379 (78 - 456)
definitionCHROMAT_FILE: MSMg01no053_b08.b1 PHD_FILE: MSMg01no053_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:53 2005CHROMAT_FILE: MSMg01no053_b08.g1 PHD_FILE: MSMg01no053_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:53 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,210,528 - 29,210,929)(37,133,766 - 37,134,144)
sequence
NGGGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTGGCATTGCGTTCATATAATTTAAGTTGCTCAAGTAAG
GGTGGATTCAAAATTAATTTAACATTATAAACATCTTTAAAGTTTAGACC
TAGAAACCATTATACTAATCCTGAAACCAAAATATAGTTATGAAACAGTT
AATGAAAAGGCAGTTGCCACGTCCTTCCCTTCCTGAGTTCCTCCTGTTCT
TGATGTTTTAAACATGACAGTGGAAATCTAACTAGACCGATATTTCTGCT
TAGAACTTGTTGGGTGTTGTTTTTCTCAAGGCTTTTTGTTTTGTCTCATT
GTATGATATCTTTGTCTCATTTGACTGTCATCTCAAGACCGGCTCTTTTC
AGAAGAGGAAGTGCACAGGGAGTAGATCTGGGGAAGAAGGGAGGTATGGG
GATTTGTAATCTTCCTCTCTAATTTCTGCCATTTCTTTTTCCTTTTTTCG
CCGCTCCCCCATCTCCCTTTCGTTTCCATATATATCGTCGTCTTTCTTTC
CTTTACTTTGCCTCTCCACATTTTTTTCATTTCTGTTTATACCACCCCTT
CCCCTCCCGTCTCGTTTATGTGTCTGCCGTTCTATTCCACCCTTCCGGAT
TTTCCATTCCCCCCTTAACGATGCGCATTTCCTCCTCCCCCCTTTTATTA
TACTTGTTCCCCTCTCGCTTTTCCCT
NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACCTTTTCTGAGACCTTAAATGT
GCTAAGAGGCTGTAGAGAACTTTTTCCAAAGTGGCTTAAACCATCAGTCC
CATCAATAAATGTGAGACCATTTATTTTAGGCCCTTCACCGACCAAAGGG
AGAGGGGATTCTTCCCGTGTAGTGAAGCCCAGCTTGGGGTTAGGGAGTGG
GGACAAGATGAAAAGATGGCTATGGAAATAAGGCATCTCTGGACCATTTG
GCTTGCAGGACAGCGTCTTCTCACTATGGGGCGCTATAGGGGTAGGGAAA
GCATGAAAACTGCGAATCTAGCCATGGCCGAAAGGAATTCAAACTCGGTC
ATCTAAGATTTGTAGAAGGACTCAGCCACAACACTCCGGACCTCCATGAC
AGACACGCAGAGTACAAACCCATAATAAGTGGAAGCCAAGGCACAATGTC
CTTTCTTCTTGCGCGGAGCGCCGAGCGGAGTGAGGCGGAAGCTGTATGAA
TAACATTTGAAACCTTACGGCAAGCACCATTGATTGGCACGCTCCCCTTT
TTTCACTGTTTCTTAAGCTCTGACCTCCCTTCCCAATAATTAGGCACGCC
TATTTAATTATTCCCTGTCCCCTGCTTAAGGGAAGGACTCTGTACTTTGT
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_b08.b1 MSMg01no053_b08.b1 CHROMAT_FILE:
MSMg01no053_b08.b1 PHD_FILE: MSMg01no053_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:53 2005
         (406 letters)



>mm_chr15_29210324_29211129
          Length = 806

 Score =  762 bits (394), Expect = 0.0
 Identities = 400/402 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattggcattgcgttcatataatttaagttgctcaagtaagggtggattcaaaat 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattggcattgtgttcatataatttaagttgctcaagtaagggtggattcaaaat 264

                                                                       
Query: 65  taatttaacattataaacatctttaaagtttagacctagaaaccattatactaatcctga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taatttaacattataaacatctttaaagtttagacctagaaaccattatactaatcctga 324

                                                                       
Query: 125 aaccaaaatatagttatgaaacagttaatgaaaaggcagttgccacgtccttcccttcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaccaaaatatagttatgaaacagttaatgaaaaggcagttgccacgtccttcccttcct 384

                                                                       
Query: 185 gagttcctcctgttcttgatgttttaaacatgacagtggaaatctaactagaccgatatt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 gagttcctcctgttcttgatgttttaaacatgacagtggaaatctaactagaccgacatt 444

                                                                       
Query: 245 tctgcttagaacttgttgggtgttgtttttctcaaggctttttgttttgtctcattgtat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctgcttagaacttgttgggtgttgtttttctcaaggctttttgttttgtctcattgtat 504

                                                                       
Query: 305 gatatctttgtctcatttgactgtcatctcaagaccggctcttttcagaagaggaagtgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatatctttgtctcatttgactgtcatctcaagaccggctcttttcagaagaggaagtgc 564

                                                     
Query: 365 acagggagtagatctggggaagaagggaggtatggggatttg 406
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acagggagtagatctggggaagaagggaggtatggggatttg 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no053_b08.g1 MSMg01no053_b08.g1 CHROMAT_FILE:
MSMg01no053_b08.g1 PHD_FILE: MSMg01no053_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:53 2005
         (379 letters)



>mm_chr5_37133566_37134344
          Length = 779

 Score =  710 bits (367), Expect = 0.0
 Identities = 376/379 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accttttctgagaccttaaatgtgctaagaggctgtagagaactttttccaaagtggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 accttttctgagaccttaaatgtgctaagaggctgtagagaactttttccaaagtggctt 520

                                                                       
Query: 61  aaaccatcagtcccatcaataaatgtgagaccatttattttaggcccttcaccgaccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 aaaccatcagtcccatcaataaatgtgagaccatttattttaggcccttcaccgaccaaa 460

                                                                       
Query: 121 gggagaggggattcttcccgtgtagtgaagcccagcttggggttagggagtggggacaag 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gggagaggggatccttcccgtgtagtgaagcccagcttggggttagggagtggggacaag 400

                                                                       
Query: 181 atgaaaagatggctatggaaataaggcatctctggaccatttggcttgcaggacagcgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atgaaaagatggctatggaaataaggcatctctggaccatttggcttgcaggacagcgtc 340

                                                                       
Query: 241 ttctcactatggggcgctataggggtagggaaagcatgaaaactgcgaatctagccatgg 300
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttctcaccagggggcgctataggggtagggaaagcatgaaaactgcgaatctagccatgg 280

                                                                       
Query: 301 ccgaaaggaattcaaactcggtcatctaagatttgtagaaggactcagccacaacactcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ccgaaaggaattcaaactcggtcatctaagatttgtagaaggactcagccacaacactcc 220

                              
Query: 361 ggacctccatgacagacac 379
           |||||||||||||||||||
Sbjct: 219 ggacctccatgacagacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)