BAC Information

Click to search

BAC

Clone NameMSMg01-053N08
Chromosome5 (Build37)
Map Location 103,761,686 - 103,761,926
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625780, Arhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039
Downstream gene1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053N08.T7 (MSMg01no053_n08.b1)MSMg01-053N08.TJ (MSMg01no053_n08.g1)
ACCAG281938AG281939
length724721
length of high quality
(start - end)
277 (70 - 346)241 (74 - 314)
definitionCHROMAT_FILE: MSMg01no053_n08.b1 PHD_FILE: MSMg01no053_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:51 2005CHROMAT_FILE: MSMg01no053_n08.g1 PHD_FILE: MSMg01no053_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAATTTTCATATAGAAATGGCTAATAAACACTTGAAAATGTAT
TCAACATCACTAGCCATCAGTGAACTGTAAATTAAAACTTAGAAATTTGG
TCTTACATCAGTCAGAATGGCCATCATCAAGAAACAAAAGAATAAAAACA
GAGGATGTGGGAAAAGATGAATCAATATGTATTCATTTGGGAATGCAAGC
TGGTGCAGAAACTTTACAAAGAGTAGAGATGCCCCCCAAAGACTGAAAAT
GATGAAGGTTCTTAGAGTGAGTATAGTGCTCACGCATACACACACACACA
CACACACTCATTCACTCACACTCTCACACACACTTACACACACTTATTAG
TAATGCTTGGACATGTTCCTGGACCTTAATGTGCTTAACGAGCTTATCCC
ATATGCTACATTTGTTTTTTCCCACCCCATGTACCTATGAATTGTTGGCT
GTTACCCTACATGAGTTACTCCCTGTTCGTTGTTGTTTAACCGTTTCATA
ATCCATCTCGTTTGACTTTTAATTTCTTTTTTTTATCCGTTTATCCTCTC
CTTGAATTACTCATCATTTTAAGCTTTCCCTTTCCATTCCAGGTTTCTCT
TATCCCTATCCGGTTTTTTGTGTGGCTTACGACCCTTCCCACTTTTTTTT
TTATCTCCCTATGCCCCTTCCTCG
TCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGTCATTCAGACATCTTCATTGGAC
GTCAAGCATTTCTTATTTTCGAGCTATTAAGACTGCTGTCTCTCAAATCC
ATAGCATCTAGTTACCTTTTCCTTAATTGTTCACATACATATACACATAC
ATACAGACACAATTACACACACCCAGAGACAGATTTACACACATAGGCAC
TTAAACAGATACACACACACACAGACATACAGATATACACATATAGACAC
TTAAACAGATACACACTTTTACTTAAACACAGACACACATTCACACAGAT
ACAAACACTTATACCTACCCTGACCTACACAGATTCTCACATACAGACAC
ACCCAGAGAATCACACCAAGACATAAACTACATGTATGTACTCCTTAATA
TATTATGCTTATGATAATACTTAGAGATTAATTTTTCTCATCCCGTGCAA
TGTTACCTGAACGCCAATCTCGTATCTCAAGAGTATGGCTTTAGACTTTT
CTTTTATTTTACAACTTAAAAATTCCGCGCCATTGAATTTTTAGCGCCTC
CCCGCTGTTTAATTACACGGGTATCTGCGGAATTAAATCCTATTTTCCAT
GCTTGCCGCCCACCCCGCTATCTAGTAGCTCTATTCTACTTCTCCCCGCC
AAACACTCGTTTGGCATACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_n08.g1 MSMg01no053_n08.g1 CHROMAT_FILE:
MSMg01no053_n08.g1 PHD_FILE: MSMg01no053_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:51 2005
         (241 letters)



>mm_chr5_103761619_103762259
          Length = 641

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtcattcagacatcttcattggacgtcaagcatttcttattttcgagctattaagac 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 308 tcagtcattcagacatcttcattggacgtcaagcatttcttatttttgagctattaagac 249

                                                                       
Query: 61  tgctgtctctcaaatccatagcatctagttaccttttccttaattgttcacatacatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgctgtctctcaaatccatagcatctagttaccttttccttaattgttcacatacatata 189

                                                                       
Query: 121 cacatacatacagacacaattacacacacccagagacagatttacacacataggcactta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cacatacatacagacacaattacacacacccagagacagatttacacacataggcactta 129

                                                                       
Query: 181 aacagatacacacacacacagacatacagatatacacatatagacacttaaacagataca 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 128 aacagatacacacacacacagacatacagatatacatatatagacacttaaacagataca 69

            
Query: 241 c 241
           |
Sbjct: 68  c 68


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)