BAC Information

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BAC

Clone NameMSMg01-054A16
Chromosome5 (Build37)
Map Location 27,374,616 - 27,375,086
singlet/doubletsinglet
Overlap geneDpp6
Upstream geneEG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneB930011P16Rik, Speer4b, Paxip1, Htr5a, EG433862, LOC231069
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054A16.T7 (MSMg01no054_a16.b1)MSMg01-054A16.TJ (MSMg01no054_a16.g1)
ACCAG282086AG282087
length767714
length of high quality
(start - end)
285 (126 - 410)473 (73 - 545)
definitionCHROMAT_FILE: MSMg01no054_a16.b1 PHD_FILE: MSMg01no054_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:08 2005CHROMAT_FILE: MSMg01no054_a16.g1 PHD_FILE: MSMg01no054_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGNGTTTGTTTTTGCTTTTTGTCTTTCCCCTCCAACCCATTGCGCTTT
CNNCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGAT
CCGCGGAATTCAATTTTTCGCACACACATTAGGCACAACTGCCTAGTACT
TCTGATGCCCTCTTCTGGCCTCTGTGGGTACATGCACTCACATGCACATA
CCCACATAGACACAGACATACACACCCCACACAAACATGTAGATAAATAA
TAAATCTTTAAAAATATTAGAGACAAAAATGACTCTGTGTGTGTGTGTGT
GTGTGTGTGCGCGTGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGCTGTG
CATGAGAGGGCATGCACATATATTTTAAATGTGACCAGGGCAGCAAATAA
AACCCCAGCCTGTGTGCCACCACCACACCGCAGCTTGGCAAGGGAAGCAA
GGAAGTAATATACACATACACCACACCCGTGCTGTGGGGCTTGTATGCCC
AATGCTTATGGCACCATGCTGTAAGGTGGCACCATGCTGCAGGGCTTGTA
TGTGGGATGCTTATGACTCTCAGCATCTATGTAAGTCTGACACATTACAC
CCCTAATGTGAGCACTGATTCCAGGCAACACTAACACAAATTTGCTCTCT
GTCCATGTTGCTAGTGATGTCATCCACAGGTGTGACTCTTCCTTGCTTCT
TGGAGGTAAGTTGAGACATTTCATGGCCCTGCCTGTAGTTGTTTCTTCCC
AAGAATGTGATAAATTT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGTGAGTCTCTCCAAAGTCCCAACCCA
TGGTGATGCTGGTGTAAGGAATGAGCTAGCTTATCGCAGCTCAGCCTCTA
AGGCCTGGATCAGGGGACAAAGAAGGAGGTGGAGCAGCCAAAAGCCAGTA
GTGCCCAGAGGCTCAAGAAAAACAAGGGTTCCAGAAGCCTACAGGGAGGA
ATCCAGGACGCAAGTAGAGGGAGATGCCAGACATGGCCTAGACTAACAGT
CAGACACAATTTGCGCATCTCTCCACACGAGGGCACTTGAGCACGCTCGA
ATGCACCAAATGAGTTTGTTATTGGAAGCCCTATGTGCTGCACAGCGTTC
GGTGTCAAAGAGCCCCTCTCACTGCATCTCAATGTCAAAATGGGGTGGAA
CAAGGTTTGGAAAGGTTGCTGACTTCCAAGCGCTTTAGCGTTTCCCCTGT
ATTTACACAAAGACAGGCAGGCTGGAGCCAGACATACCCTGGGTAGGCCT
TGTTCATGAGGCTTGAAATAAGCCTAACCAGGAGTTCTGTTGCCTGTTCT
AGACTTGCCCTTCCCTTCTTCAGAGGATTCAAAGAAAATGTATCCTTTTT
TGTTTTAATAAAAACAAATCCCAGCCGATGAAGGAAGGTGGGTCCGGGAA
CAAATGTTTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_a16.g1 MSMg01no054_a16.g1 CHROMAT_FILE:
MSMg01no054_a16.g1 PHD_FILE: MSMg01no054_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:08 2005
         (473 letters)



>mm_chr5_27374416_27375288
          Length = 873

 Score =  888 bits (459), Expect = 0.0
 Identities = 468/471 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtgagtctctccaaagtcccaacccatggtgatgctggtgtaaggaatgagctagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtgagtctctccaaagtcccaacccatggtgatgctggtgtaaggaatgagctagctt 260

                                                                       
Query: 61  atcgcagctcagcctctaaggcctggatcaggggacaaagaaggaggtggagcagccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcgcagctcagcctctaaggcctggatcaggggacaaagaaggaggtggagcagccaaa 320

                                                                       
Query: 121 agccagtagtgcccagaggctcaagaaaaacaagggttccagaagcctacagggaggaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccagtagtgcccagaggctcaagaaaaacaagggttccagaagcctacagggaggaat 380

                                                                       
Query: 181 ccaggacgcaagtagagggagatgccagacatggcctagactaacagtcagacacaattt 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggatgcaagtagagggagatgccagacatggcctagactaacagtcagacacaattt 440

                                                                       
Query: 241 gcgcatctctccacacgagggcacttgagcacgctcgaatgcaccaaatgagtttgttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcgcatctctccacacgagggcacttgagcacgctcgaatgcaccaaatgagtttgttat 500

                                                                       
Query: 301 tggaagccctatgtgctgcacagcgttcggtgtcaaagagcccctctcactgcatctcaa 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 tggaagccctatgtgctgcacagcgttcagtgtcaaagagcccctctcactgcatctcaa 560

                                                                       
Query: 361 tgtcaaaatggggtggaacaaggtttggaaaggttgctgacttccaagcgctttagcgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtcaaaatggggtggaacaaggtttggaaaggttgctgacttccaagcgctttagcgtt 620

                                                              
Query: 421 tcccctgtatttacacaaagacaggcaggctggagccagacataccctggg 471
           ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 tcccctgtatttacacaaagacaggcaggctggagccagacatactctggg 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)