BAC Information

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BAC

Clone NameMSMg01-054M06
Chromosome5 (Build37)
Map Location 111,822,072 - 111,905,507
singlet/doubletdoublet
Overlap geneMn1
Upstream geneGalnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2, Ttc28, Pitpnb
Downstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054M06.T7 (MSMg01no054_m06.b1)MSMg01-054M06.TJ (MSMg01no054_m06.g1)
ACCAG282611AG282612
length781707
length of high quality
(start - end)		116 (130 - 245)418 (75 - 492)
definitionCHROMAT_FILE: MSMg01no054_m06.b1 PHD_FILE: MSMg01no054_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:02 2005CHROMAT_FILE: MSMg01no054_m06.g1 PHD_FILE: MSMg01no054_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,822,072 - 111,822,183)(111,905,090 - 111,905,507)
sequence
TTTTNNNTTTTNNNNNTTTTNTTTTTCCCCCCTTTNACACCGTCACCCCC
CTTTTTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGGATCTTGCTAATATGGGATCTATTGGGATTCCAGTC
TTCCTCTCAGCCCCTACTGAGTGACAGGCGCGGCTTTTCTACTCATGAGG
TTGAGGACTGGATCTGTGCATGTTAGTGCTGTCCATGGTGGAACGTCACT
GCCCTAGATCTCACATCTCATTGCTATCTACCCCAAGGCTCAGCCATGCG
ACAGCCATCATCTCAGGATGCTGGGAGGTGGGAAAGTGCTGGGATGAGAT
GGGGACCCTGTGGTTGCTCAGAGGCCTTACTGTTGCTAGCCGTCTCCTGC
TAGGGAGCCCTGCGAGCGTGCTTGAAACCACGGAGAGGTAGCATGGAGCT
GTCTGCTACACACTCTGCCACACGCCATGCTGGCTGAAGGTCTATGGCGT
CTTGCACATGTACTCCGATGCCTGCCCACCCACCCGCGTTACTGAACAAT
AGGCCCCAAATGAAGGTTGACCCCTCTGATCCTTGGTGTTCCGCCAGTGA
AGGTCTGGATTGCCGACCCTACCTCGGCACACGGGTCTGTGACAAGTAAA
CCCGAAAACAACTCTTTCGTGCCGTGGTTGTTTTGCTTAGCTTATAGTTC
CCCTTCCCTATGTTGTTACTGTCCCAGCTACTAAAGTGTTTCCTTGCGGC
AGGGGCAGAACCTGTTTGGGATCATATAAAN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACCCCATGCAGGCAAGGTAACACTC
CAATCCCTTGATAGTTCCCTTGCCCCACATGCCTGACCCTGCACTCACGT
CAGACATTGCTAATCGATCCCTGCATGCTTTTCCAGGAAGCACTGGTTCC
AGGCCCAAATTCTCAGGCCAACATTCCAGAGAACCACTCTCTTGGCACTC
TGCACCCACAGAGGAAACAGAGGTGACTTTGGTCTGTTTTATAGAAGAGA
ATGGTAGGATGCTCAGTCCTGGGGAGCCCATGAGGCCTGACATGCCTGAC
AGCTCCGGGAGAGTCCTGATGCAGCAGGTGGACTGGGGTGCCATGGGGCG
CAGCTAGGCAGCTGCCACAGAACACCCCGTGTCCCCTGCCCTTGCCGACT
GGGCTCTGCCCACTGGCTTCCCACAGCTGCTCTTTTGAAAGCCTTGTATG
GGAAGCTGTGGATGAGGCTCCCCGTTCCCTCTTCAGGCCATTGTCCCTCC
CTGGCGCCAGCCATGCCCCCCCCCCTTAGTTGCTTAATTAACAGTATTAC
TAATGCCAAGAGGGAAGTCACAGATCCTCTATGGTACAGCTCCAGATCTG
AGGATGAGCCGAGCCACAGGCCTTCAGGAAGCACGCCTGGTGCCAGATGA
TGTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_m06.b1 MSMg01no054_m06.b1 CHROMAT_FILE:
MSMg01no054_m06.b1 PHD_FILE: MSMg01no054_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:02 2005
         (116 letters)



>mm_chr5_111821872_111822387
          Length = 516

 Score =  194 bits (100), Expect = 2e-54
 Identities = 109/112 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggatctattgggattccagtcttcctctcagcccctactgagtgacaggcgcggcttttc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 201 ggatctattgggattccagtcttcctctcagcccctactgagtgacaggcacagcttttc 260

                                                               
Query: 61  tactcatgaggttgaggactggatctgtgcatgttagtgctgtccatggtgg 112
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tactcatgaggttgaggtctggatctgtgcatgttagtgctgtccatggtgg 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 516
Length adjustment: 8
Effective length of query: 108
Effective length of database: 508
Effective search space:    54864
Effective search space used:    54864
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no054_m06.g1 MSMg01no054_m06.g1 CHROMAT_FILE:
MSMg01no054_m06.g1 PHD_FILE: MSMg01no054_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:02 2005
         (418 letters)



>mm_chr5_111904890_111905707
          Length = 818

 Score =  785 bits (406), Expect = 0.0
 Identities = 415/418 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccccatgcaggcaaggtaacactccaatcccttgatagttcccttgccccacatgcct 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaccccatgcaggcaaggtaacgctccaatcccttgatagttcccttgccccacatgcct 559

                                                                       
Query: 61  gaccctgcactcacgtcagacattgctaatcgatccctgcatgcttttccaggaagcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gaccctgcactcacgtcagacattgctaatcgatccctgcatgcttttccaggaagcact 499

                                                                       
Query: 121 ggttccaggcccaaattctcaggccaacattccagagaaccactctcttggcactctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggttccaggcccaaattctcaggccaacattccagagaaccactctcttggcactctgca 439

                                                                       
Query: 181 cccacagaggaaacagaggtgactttggtctgttttatagaagagaatggtaggatgctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cccacagaggaaacagaggtgactttggtctgttttatagaagagaatggtaggatgctc 379

                                                                       
Query: 241 agtcctggggagcccatgaggcctgacatgcctgacagctccgggagagtcctgatgcag 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 378 agtcctggggagcccatgaggcctgacgtgcctgacagctccgggagagtcctgatgcag 319

                                                                       
Query: 301 caggtggactggggtgccatggggcgcagctaggcagctgccacagaacaccccgtgtcc 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 318 caggtggactggggtgccatggggcgcagctaggcagctggcacagaacaccccgtgtcc 259

                                                                     
Query: 361 cctgcccttgccgactgggctctgcccactggcttcccacagctgctcttttgaaagc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cctgcccttgccgactgggctctgcccactggcttcccacagctgctcttttgaaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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