Query= MSMg01no054_n06.b1 MSMg01no054_n06.b1 CHROMAT_FILE:
MSMg01no054_n06.b1 PHD_FILE: MSMg01no054_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:06 2005
(513 letters)
>mm_chr5_116988047_116988957
Length = 911
Score = 592 bits (306), Expect = e-173
Identities = 316/320 (98%), Gaps = 2/320 (0%)
Strand = Plus / Minus
Query: 194 cccccgccccccgcccccacccctgtagtatcctccttccctggggcctcaagtttctca 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 cccccgccccccgcccccacccctgtagtatcctccttccctggggcctcaagtttctca 852
Query: 254 aggattaggcacatcttctcccactgaggccagactaggcagttccttgatatatctatg 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 aggattaggcacatcttctcccactgaggccagactaggcagttccttgatatatctatg 792
Query: 314 tgcctggggctgcagaccagcccatggatgctgcctggttggagtctcattttgaaaaca 373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 791 tgcctggggctgcagaccagcccatggatgctgcctggttggagtctcattttgaaaaga 732
Query: 374 tcagaaattgcttgggactgggctgacagtagctgtggactaggtatcagaggcaggtgg 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tcagaaattgcttgggactgggctgacagtagctgtggactaggtatcagaggcaggtgg 672
Query: 434 agatcaccgccccctgctggtcaaaaccagaaacgacccctttcctcacacatactgttt 493
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 671 agatcaccgccccctgctggtcaaaaccagaaacgacccctttccttacacatactgttt 612
Query: 494 tttttttgcattggttcttg 513
||||| |||||||||||||
Sbjct: 611 ttttt--gcattggttcttg 594
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 911
Length adjustment: 10
Effective length of query: 503
Effective length of database: 901
Effective search space: 453203
Effective search space used: 453203
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no054_n06.g1 MSMg01no054_n06.g1 CHROMAT_FILE:
MSMg01no054_n06.g1 PHD_FILE: MSMg01no054_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:06 2005
(594 letters)
>mm_chr5_116903679_116904669
Length = 991
Score = 977 bits (505), Expect = 0.0
Identities = 538/551 (97%), Gaps = 7/551 (1%)
Strand = Plus / Plus
Query: 1 cacagaaataggagatctctagatcttattttttgtttgttttgttcctgttttg-tttt 59
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 201 cacagaaataggagatctctagatcttattttttgtttgttttgtt-ttgttttgttttt 259
Query: 60 tttaaaccccctgctagaagaactggaagattcaggagacatgcagggaaaaaggcatgc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttaaaccccctgctagaagaactggaagattcaggagacatgcagggaaaaaggcatgc 319
Query: 120 gattcagagtaaacgaaagtcaaaggaaatcatacaaaaaatatagtcttcaataaactc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gattcagagtaaacgaaagtcaaaggaaatcatacaaaaaatatagtcttcaataaactc 379
Query: 180 aaacagaaagagacaaattaatagaaaagggagggctgtagacacccttaacctcaaaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaacagaaagagacaaattaatagaaaagggagggctgtagacacccttaacctcaaaga 439
Query: 240 ataatcaaaaggaaggaaaggggagcggggaaggaaaaaaaaaaaagaaaaggggctatg 299
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 440 ataatcaaaaggaaggaaaggggagcggggaaggaaaaaaaaa---gaaaaggggctatg 496
Query: 300 ggcctcaaaaattatatcttggaaattaaaaacgcaaaaggccaaggcttaaatttaacc 359
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 497 ggcctcaaaaattatatcttggaaattaaaaacgcaaaaggccaaggtttaaatttaacc 556
Query: 360 aaaatcctcagctaactctctctctctct--ttctctctctcagaaaaagttgcttgcat 417
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 557 aaaatcctcagctaactctctctctctctctttctctctctcagaaaaagttgcttgcat 616
Query: 418 aaaatactgaagaagtgtcatatgggccaaagaaataaagatgagggttggtgtctctct 477
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 617 aaaatactgaagaagtgtcatatgggccaaagaaataaagatgagggttggtctctctct 676
Query: 478 ttctttctttctttctttctttctttctttctttctttctttctttctttctttctttct 537
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctctctctttctttcttcctttctttctttctttctttctttctttctttctttctttct 736
Query: 538 ttctttctttc 548
|||||||||||
Sbjct: 737 ttctttctttc 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 991
Length adjustment: 10
Effective length of query: 584
Effective length of database: 981
Effective search space: 572904
Effective search space used: 572904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
