BAC Information

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BAC

Clone NameMSMg01-055C19
Chromosome5 (Build37)
Map Location 58,448,470 - 58,449,071
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055C19.T7 (MSMg01no055_c19.b1)MSMg01-055C19.TJ (MSMg01no055_c19.g1)
ACCAG282912AG282913
length6991,561
length of high quality
(start - end)		606 (43 - 648)---
definitionCHROMAT_FILE: MSMg01no055_c19.b1 PHD_FILE: MSMg01no055_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:31 2005CHROMAT_FILE: MSMg01no055_c19.g1 PHD_FILE: MSMg01no055_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTAGTTTACTCTGACATTTTTTATAATAATTTGCTAAATGTCTGTATG
TCCATAGTTTTCTCTTACTCCACTTACATTGTAAAGTTCTTACTTATATA
CTACAGGCCACACTTTCTCTCCCATGCTAACTATATGCTCAGTAATTGAA
GAAGCATTAATTTTACCTGGACTGTGATCTCTTAGCAACAGGTAACTGAA
GGAAGAGAAAGTTGAAAATTGCAACCCTGACTCTGAACAGCAAAGCGAAG
ACAATTTTCAGTGAAGTCCGTTTAATTTAAAATCTCTTTTCTGCCTATCA
GGCATTCTTACCACTAACCACTGCTATTAGGGTGGTGCTCACTCCTCCTA
ACCGGGGGATTGCTCTCTTGGATGTTACAATAACTCAGCTAAGCACACTG
GACTGAAGTTGCCACTCTCATATCTATTGCCAATATGAAAGAAAAAGCCC
AAGAATATGTGAAAATTCTGGTGTTCTTGTGTCACTTGCCATAAATATCA
GCACAACCAATATATACAGCATTCCCAGGGGGGTCACAGTTCCGGCCTAC
ATCACCAACGTGGTGCTGGCAACATTGCCATATGTCACCCAAATTAAATT
CTAAATTAAGCATCTCTAACTGCCATGCCGAGAATCAAAGTCAACTTGA

CGCGAGCGCGGGGGCGCGGGTCCTCGGGCGTCGGCGGTTGTGGGCGGAGA
AACAGCCTAGACACGCAAATACAAAAGAGAAATGAAAGAGCAAAATGCAT
GTGTTCGCGCCGCCGGAGTCCCCGCCGGGGGAGAGGAGAAGATATTAAAA
TTTCACGGCGCCCGCGTATCTGAACTATAACACGCCGCGCCTCTCTATGA
CGCACCGCCNGCGTGTCTCATCTTGTAATATTAGGGCGGCAGGTGAGCGT
AAGATTAATAAATATAATACAGATATAGAGCCGCGAGCAGTGCCCCCTTT
AACGCGGGCCCCCGCTGCTCTCGCCGCCACTATATTAGTGCGCAGGCATT
AGGTACGACCGACTACTCACGGGAGGGCGACCTATACTGACAACTGATCA
GCGGAGGGGTTGACAAAGCGATACTAGATAGATATTAGGAAGAATTTGTG
AGGAGTACGTTCGCAGAAGGANTGTAAGCAAGAACAAGATTCTGAGTAGT
GCACACATAGTTCACACGAGACACGACTCGGTATAACCGTGCTGAGACGC
GCGTATTTATTCTATATATGGGCGCGCCACTACCTCTCCGAAATAGCTTT
ACACGTTTCCGCTGCACTTGTTTGTATTATTAACCATTACGATATTTCAC
GCGTATGCGCCTAGACAATTACCGCCCGCACCTCAGATACATCACCGTGT
ATGCGTGTATATCTAATTTTCGCCACCCTCCGCCCGCGCGATGGCGCGCG
TGTGCGACTGAGANTGATATNTACGTTCTCCCGCTCCGCATACCGCGTGT
TTANATTGTCTTTCCACAGAGATGGTGTTCGGCCACAACTAAAAGATTAG
CGTCGGGGAGACAAGACCGTCTCCGTGACTACGCCCGCTATCCGACTGCT
TGCTTGTGCGTAGGTATATTGCTATACGCATACGCGAGACGGTCCAATGC
TATCATCTACGTCCACACGCTCGTTGTCCCGCGCGCTCGCCTGACGTTAC
GACCCTCCTAACACGTATGGTCGCGTCGCGTCATTAGTGTTACGCCGCGA
TTGTCATCTCTGCGATATGATTATTCGCCCGCCCTGCGCACGTACAGATC
CGCGGCTGTCTCTAATATGCGTGCGCGCCGAGACATTAGTAGAGTGCCGC
GACCGATATATACAACGCGCGATCTTATATATTCTCATCGGCATACGGAT
TATATATGAGAAACGCACGTAACGCATGAGACGCGCCTACAGATAATAGT
CGCTACTGTATATTATACTCCGCACGGCGCAGTATATCTCGCGCTATCCG
ATTAATATATCGAGGTGGNGTATGCCGTTATGGCGCACGAGAAGACGATT
CGAGCCGGATTCTATAGTCGCGTTCGAGTCGATCTAGATTTATTTCGGTG
ACCGTCATGTTCTTCGCGCCCGTCTGCACATATGATGTGACGTGTGTAGT
ATGACGCGTTTTGTGTATCGCGTGTGGTTAATCCGTGTCGGTGNCGCCGC
TTTATGCTCNGTATAGGCGTTAGACCGCATNATCAGACCTATATCATCCG
TCTTAGGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_c19.b1 MSMg01no055_c19.b1 CHROMAT_FILE:
MSMg01no055_c19.b1 PHD_FILE: MSMg01no055_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:31 2005
         (606 letters)



>mm_chr5_58448266_58449271
          Length = 1006

 Score = 1094 bits (566), Expect = 0.0
 Identities = 593/602 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttagtttactctgacattttttataataatttgctaaatgtctgtatgtccata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gaattcttagtttactctgacattttttataataatttgctaaatgtctgtatgtccata 747

                                                                       
Query: 65  gttttctcttactccacttacattgtaaagttcttacttatatactacaggccacacttt 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gttttctcttattccacttacattgtaaagttcttacttatatactacaggccacacttt 687

                                                                       
Query: 125 ctctcccatgctaactatatgctcagtaattgaagaagcattaattttacctggactgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ctctcccatgctaactatatgctcagtaattgaagaagcattaattttacctggactgtg 627

                                                                       
Query: 185 atctcttagcaacaggtaactgaaggaagagaaagttgaaaattgcaaccctgactctga 244
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 atctcttagcaacaggtaagtgaaggaagagaaagttgaaaattgcaaccctgactctga 567

                                                                       
Query: 245 acagcaaagcgaagacaattttcagtgaagtccgtttaatttaaaatctcttttctgcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acagcaaagcgaagacaattttcagtgaagtccgtttaatttaaaatctcttttctgcct 507

                                                                       
Query: 305 atcaggcattcttaccactaaccactgctattagggtggtgctcactcctcctaaccggg 364
            |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctcaggcagccttaccactaagcactgctattagggtggtgctcactcctcctaaccggg 447

                                                                       
Query: 365 ggattgctctcttggatgttacaataactcagctaagcacactggactgaagttgccact 424
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggattgttctcttggatgttacaataactcagctaagcacactggactgaagttgccact 387

                                                                       
Query: 425 ctcatatctattgccaatatgaaagaaaaagcccaagaatatgtgaaaattctggtgttc 484
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cccatatctattgccaatatgaaagaaaaagcccaagaatatgtgaaaattctggtgttc 327

                                                                       
Query: 485 ttgtgtcacttgccataaatatcagcacaaccaatatatacagcattcccaggggggtca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttgtgtcacttgccataaatatcagcacaaccaatatatacagcattcccaggggggtca 267

                                                                       
Query: 545 cagttccggcctacatcaccaacgtggtgctggcaacattgccatatgtcacccaaatta 604
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cagttcctgcctacatcaccaacgtggtgctggcaacattgccatatgtcacccaaatta 207

             
Query: 605 aa 606
           ||
Sbjct: 206 aa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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