BAC Information

Click to search

BAC

Clone NameMSMg01-055K01
Chromosome5 (Build37)
Map Location 90,779,290 - 90,779,719
singlet/doubletsinglet
Overlap geneAnkrd17
Upstream geneGc, LOC622870, Npffr2, LOC631105, Adamts3, EG665733, Cox18
Downstream geneAlb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055K01.T7 (MSMg01no055_k01.b1)MSMg01-055K01.TJ (MSMg01no055_k01.g1)
ACCAG283249AG283250
length922723
length of high quality
(start - end)
---436 (79 - 514)
definitionCHROMAT_FILE: MSMg01no055_k01.b1 PHD_FILE: MSMg01no055_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:04 2005CHROMAT_FILE: MSMg01no055_k01.g1 PHD_FILE: MSMg01no055_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCAGAGGATCCGCCG
GAATTCCTGATAGTGCCCGTTATGCGATACATGAACGATAGATCACATGA
TCACATACGATACGATAGATAGATAGCCCACANCTCGATAGATAGATAGC
ATAGATCAGATCAGATAGCATACGACACGATCCCCCCGTATCTCATCCCC
CACCCCCCCTTCCCCCCCCTCCCCTTCCTCACCTCCCCCCCCACTCCCCC
CCTCCCTTCTCCCACCACCCCCCCCCCCCCCTCCCCCCCCCCCCCCCTCC
CCCCCCCCCCCTCCCCCCCCCCCCCCACTCCCCCCCCTCCCCCCCCCCAC
TCCCCTCCCCTCCCTCCTTCCTCCCCCCCCCCCTCCCCCCCCTCCCCCCC
CCCCCCCCTCTCTATCTTCCTTCCTCGCCTCCCCCCCTCCCCCCCCCCCC
CCCCCCCCCTTCCCCTCCCCCCCTCCCCCCCCCCCTCCCCCCCCTCCCTC
CCCCCCCCCCCCCTCCCCCCCCCTCCGCCCCCCCCCCCCTCCCCCCCCCC
CCCCCCCCCCCTCCCTCCCCCCCCCCCCCCCCCCCCCCCTGCCCTCCTCC
CCTCCCCTCTCCCCCCCCCTCCCCCCCCCTCTCCCCCCCCCTCCCCTCCC
CCTTCCCCTTCCCCCCCTCCCCCCCCCCCCCCCCCCCCTCTCCCCCCCCG
CCCCCCCCCCCCCCCCCCCCTCCCGCCGCCCCCCTCCCTCCCCCCCCCTC
TCCCCTCCTCCCCCCCCCCTCCCCTCCTTCCCCCCCCCCTCTTTTCTCTC
ATGCCCTCCCCACCCCCCCCACCCCCCTCTCCCCTCTCCCCCCCTCCCCC
CCCCTCCCACCCTCCCCCCCCCTCCTCCCCCCCACCCACCCCCCCCCCTC
CCCCCCACTTTTCCCTCCCCCN
CCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCAAATATTACAGTTTCAA
AAATGTATGTTGCCACGAATAGTAAAGTAAGAGTTAAAAACCAGAGCATG
GGGCTAACAAGATGCTCAGTAGCAGATGAAGGTGCTGGATGGCCATGTAA
GCATGATCTAAAGGCTGAGGCCCACATAAAGGCTGAGAAAGTGGACCCCA
CAAAACGTCCTGACCTCTTTACACACTTACACACACACACACACACAGAA
ACTGATACTAAATAAGAAGCATCAGGAACTACTTTTTAAACATCTCCATT
TATGCAAAACAAAACTTTTGATTCTATAAATGTTATTTATACACATGTAA
GAAAATGTAGAGGAAAAGGTAGAAAATAAAGCTTAAAAACATACCTGATA
TATAATTATTATTATTATTCTCTATTTTACTCTACTGTTTTGATCTTTCA
GACAACATTTACTATGTACCCTAACAAAGAAAGTTAATATATCTTTAAGA
TTGCAACAACATAAAATTGAATGCTACCAACAATTTCATATTTCTGGTAG
AAACTTTTAAAAGGTTCTCTTTGAAGGATGTTGTCCTATTCCCTCCACAG
AAGGAAACATATCCACTTTAAATCTTAGAGAAGTTCTAGTCTCATTATTC
CATGAAGAGTACCTGTGCGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_k01.g1 MSMg01no055_k01.g1 CHROMAT_FILE:
MSMg01no055_k01.g1 PHD_FILE: MSMg01no055_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:04 2005
         (436 letters)



>mm_chr5_90779090_90779925
          Length = 836

 Score =  801 bits (414), Expect = 0.0
 Identities = 428/436 (98%), Gaps = 6/436 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctccaaatattacagtttcaaaaatgtatgttgccacgaatagtaaagtaagagttaaa 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tctccaaatattacagtttcaaaaatgtatgttgccaccaatagtaaagtaagagttaaa 260

                                                                       
Query: 61  aaccagagcatggggctaacaagatgctcagtagcagatgaaggtgctggatggccatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccagagcatggggctaacaagatgctcagtagcagatgaaggtgctggatggccatgt 320

                                                                       
Query: 121 aagcatgatctaaaggctgaggcccacataaaggctgagaaagtggaccccacaaaacgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcatgatctaaaggctgaggcccacataaaggctgagaaagtggaccccacaaaacgt 380

                                                                       
Query: 181 cctgacctctttacacacttacacacacacacacacacagaaactgatactaaataagaa 240
           ||||||||||||||||||||      ||||||||||| ||||||||||||||||||||||
Sbjct: 381 cctgacctctttacacactt------acacacacacatagaaactgatactaaataagaa 434

                                                                       
Query: 241 gcatcaggaactactttttaaacatctccatttatgcaaaacaaaacttttgattctata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gcatcaggaactactttttaaacatctccatttatgcaaaacaaaacttttgattctata 494

                                                                       
Query: 301 aatgttatttatacacatgtaagaaaatgtagaggaaaaggtagaaaataaagcttaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aatgttatttatacacatgtaagaaaatgtagaggaaaaggtagaaaataaagcttaaaa 554

                                                                       
Query: 361 acatacctgatatataattattattattattctctattttactctactgttttgatcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 acatacctgatatataattattattattattctctattttactctactgttttgatcttt 614

                           
Query: 421 cagacaacatttacta 436
           ||||||||||||||||
Sbjct: 615 cagacaacatttacta 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)