BAC Information

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BAC

Clone NameMSMg01-056F05
Chromosome5 (Build37)
Map Location 37,983,397 - 37,983,816
singlet/doubletsinglet
Overlap geneStk32b
Upstream geneLOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988
Downstream geneCytl1, Msx1, Stx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056F05.T7 (MSMg01no056_f05.b1)MSMg01-056F05.TJ (MSMg01no056_f05.g1)
ACCAG283762AG283763
length716708
length of high quality
(start - end)
298 (74 - 371)420 (74 - 493)
definitionCHROMAT_FILE: MSMg01no056_f05.b1 PHD_FILE: MSMg01no056_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:57 2005CHROMAT_FILE: MSMg01no056_f05.g1 PHD_FILE: MSMg01no056_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCTTTCCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAGGTCCACCTTCTTGAGTTCCTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAATTTTCAGCGCCTCCCGCTCTATGTGAAGTTCCTTGA
TCCACTTAGATTTGACCTTACTACAAGGAGATAAGTATGGATCGATTCGC
ATTCTTCTACACGATAACAACCAGTTGTGTCAGCACCAATTGCTGAAAAT
GCTGTCTTTCTTCCACTGGATGGTCCCAGCTCCCTTGTCGAATATCAAGT
GACCATATGTGTGTGTCCTCATTTCTGCGTCTTTCACTCTATTCCATTGT
TTTATTTGCTTGTCTCTAAACCAATATTTATGCAGATTTTTTTCAAATTG
TTCCTGTTTTAAGTCTTTCGCTTTGGTTTGTTGTTTCCACCATACATTCC
TCTATCCTTTTACAAC
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGATGAATAGATATATAAATGAGTAGAA
TGGGGGCTTGTATGGATGTATGGATACATGGATGGCTGCATGGGAGCAGA
GTGATGACTTCAGGGTCTATAAAATATAGAGTCTTGACTCTGATGGCTTC
TGAGTTGCTTGGCTTGGTTTTATGTTATCTTAGGAGCTCTCAAATGCTGA
GGCTCCTTCAGGCCCTTTAGATTAGCCTTCATAATTATTACCCTATGCAT
TCATTGATTTACATGAACATCCTTAAATCCATCTACTTTCTCTCCATTTC
TTCCAAACATAATCTACTAGCCACCATGAAACCTACATGACTTGGGGCTT
CCTTCCACACCTCAGTCTATCCGACACAGTGGTTGGGACCAACATTTTCA
ATGACCAAGCAGCTTGGTGGATTAACGATGCACTCCAGTCTCGTGGGTGT
GACTCCAAGAGGAGGTGGGATCCCTTTTTTCCTGTGGGCATAGCTGCTGT
TAGCTGACAGCATGTGAACTCCGTGTGTGGTGGCCACTGTGTCCGGAATA
ATATGCTCATACCTTTAAGCTACATGCTGAGTGATGAGTCTCTTGAGACC
CTGATATAGCACATTGCCAATCCAACTATTAATGGTTTGCTCTGTGAAAC
TGCTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_f05.g1 MSMg01no056_f05.g1 CHROMAT_FILE:
MSMg01no056_f05.g1 PHD_FILE: MSMg01no056_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:57 2005
         (420 letters)



>mm_chr5_37983197_37984016
          Length = 820

 Score =  804 bits (416), Expect = 0.0
 Identities = 419/420 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgaatagatatataaatgagtagaatgggggcttgtatggatgtatggatacatggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatgaatagatatataaatgagtagaatgggggcttgtatggatgtatggatacatggat 260

                                                                       
Query: 61  ggctgcatgggagcagagtgatgacttcagggtctataaaatatagagtcttgactctga 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 ggctgcatgggagcagagtgatgacttcagggtctataaaatatagagccttgactctga 320

                                                                       
Query: 121 tggcttctgagttgcttggcttggttttatgttatcttaggagctctcaaatgctgaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcttctgagttgcttggcttggttttatgttatcttaggagctctcaaatgctgaggc 380

                                                                       
Query: 181 tccttcaggccctttagattagccttcataattattaccctatgcattcattgatttaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccttcaggccctttagattagccttcataattattaccctatgcattcattgatttaca 440

                                                                       
Query: 241 tgaacatccttaaatccatctactttctctccatttcttccaaacataatctactagcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaacatccttaaatccatctactttctctccatttcttccaaacataatctactagcca 500

                                                                       
Query: 301 ccatgaaacctacatgacttggggcttccttccacacctcagtctatccgacacagtggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccatgaaacctacatgacttggggcttccttccacacctcagtctatccgacacagtggt 560

                                                                       
Query: 361 tgggaccaacattttcaatgaccaagcagcttggtggattaacgatgcactccagtctcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgggaccaacattttcaatgaccaagcagcttggtggattaacgatgcactccagtctcg 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)