Query= MSMg01no056_l17.b1 MSMg01no056_l17.b1 CHROMAT_FILE:
MSMg01no056_l17.b1 PHD_FILE: MSMg01no056_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:28 2005
(286 letters)
>mm_chr5_68646244_68646929
Length = 686
Score = 491 bits (254), Expect = e-143
Identities = 278/286 (97%)
Strand = Plus / Minus
Query: 1 atgctatttgtacatcttgggagcttcacaatatcaaatcttactcacctggttgctctt 60
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 486 atgctatttgtacattttgggagcttcacaatatcaaatcttactcacttggttgctctt 427
Query: 61 cattctctctctcaacacattcccagaactcacagctgcctcctcctggctttgaaaaga 120
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 426 cattctctctctcgacacattcccagacctcacagctgcctcctcctggctttgaaaaga 367
Query: 121 gtgctaacttctcaggagcaagatctaggcctgaaactcttgtctgttccatgcaagttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtgctaacttctcaggagcaagatctaggcctgaaactcttgtctgttccatgcaagttt 307
Query: 181 tatggaagtaaaatggaacttggtgagcactttaaatctaattcttcatcggggaaagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tatggaagtaaaatggaacttggtgagcactttaaatctaattcttcatcggggaaagtc 247
Query: 241 tggggacttcttagatcaatgctatggaatggctacaagtcaatga 286
||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 246 tggggacatcagagatccatgctatggaatggctacaagtcaatga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no056_l17.g1 MSMg01no056_l17.g1 CHROMAT_FILE:
MSMg01no056_l17.g1 PHD_FILE: MSMg01no056_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:28 2005
(303 letters)
>mm_chr5_68504317_68505016
Length = 700
Score = 551 bits (285), Expect = e-161
Identities = 298/303 (98%), Gaps = 3/303 (0%)
Strand = Plus / Plus
Query: 1 attgtgttcttccaagggaagtcagtgagctcatgagcaagagaggaagaatctattaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtgttcttccaagggaagtcagtgagctcatgagcaagagaggaagaatctattaaa 260
Query: 61 atattttttcttcagttttttttactctaataagctaaaagccgaagctggagacaatgg 120
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 atattttt-cttcagtttttt--actctaataagctaaaagccgaagctggagacaatgg 317
Query: 121 aacacttaattactttaggaaataaattttgcagagtgttttttgcaaatggggtagtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aacacttaattactttaggaaataaattttgcagagtgttttttgcaaatggggtagtgg 377
Query: 181 gggtgtgttctgctcagaactggcttaagcaattcttctggtgttttggcatcagactat 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gggtgcgttctgctcagaactggcttaagcaattcttctggtgttttggcatcagactat 437
Query: 241 aatctcataaaaagattatgttcgatctaataccttagtcataggtaaacttatacgctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 438 aatctcataaaaagattatgttcgatctaataccttagtcataggtaaacttagacgctc 497
Query: 301 cac 303
|||
Sbjct: 498 cac 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 700
Length adjustment: 9
Effective length of query: 294
Effective length of database: 691
Effective search space: 203154
Effective search space used: 203154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
