Query= MSMg01no056_m21.b1 MSMg01no056_m21.b1 CHROMAT_FILE:
MSMg01no056_m21.b1 PHD_FILE: MSMg01no056_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:33 2005
(624 letters)
>mm_chr5_82772261_82773284
Length = 1024
Score = 1118 bits (578), Expect = 0.0
Identities = 612/625 (97%), Gaps = 1/625 (0%)
Strand = Plus / Plus
Query: 1 cattccagcaagaaggttggaagaggtagatatgagagtccttgatgtatagttagtata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattccagcaagaaggttggaagaggtagatatgagagtccttgatgtatagttagtata 260
Query: 61 gcagaatagtatctgagtttggttattgaaatctgaatgagggggagttatggaacccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagaatagtatctgagtttggttattgaaatctgaatgagggggagttatggaacccaa 320
Query: 121 ctaaatctttggaggcttagataaatcccacttgtgttcaggtgcatgcacacacttatc 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaatctttggagacttagataaatcccacttgtgttcaggtgcatgcacacacttatc 380
Query: 181 caaagtatttggtgtaaatttcagaggtataaacaaattttagttattttaacaatttaa 240
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 caaagtatttggtgtaagtttcagaggtataaagaaattttagttattttaacaatttaa 440
Query: 241 acctaattttttcaaaatatgcaagaatttgcatagctatttatggggtacataatgatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctaattttttcaaaatatgcaagaatttgcatagctatttatggggtacataatgatg 500
Query: 301 ctatagtgtgtaaagaatgtgggacaactaattgatgctaattaatacaactattacttt 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatagtgtgtaaagaatgtggaacaactaattgatgctaattaatacaactattacttt 560
Query: 361 agcaatcatcaaagattttttttt-aatctaaacacaaacattgtaccctttggtggcat 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 agcaatcatcaaagattttttttttaatctaaacacaaacattgtaccctttggtggcat 620
Query: 420 ctttccatcctcctacaccctggcctttaatgatgactattctctgctgatgatcaatca 479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttccatcctcctacaccctggactttaatgatgactattctctgctgatgatcaatca 680
Query: 480 tttcacggataactgagatcatgcaaagattgtctgtctgtatttctctggnctatttta 539
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 681 tttcacggataactgagatcatgcaaagattgtctgcctgtatttctctggtctatttta 740
Query: 540 catgacacgacttcttcccctagnttaatttctatggncacatatgatatcctcatggna 599
|||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |
Sbjct: 741 catgacacgacttcatcccctagtttaatttctatggtcacatatgatatcctcatggta 800
Query: 600 aagactggntcatattctattgtgc 624
|||||||| ||||||||||||||||
Sbjct: 801 aagactggttcatattctattgtgc 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_m21.g1 MSMg01no056_m21.g1 CHROMAT_FILE:
MSMg01no056_m21.g1 PHD_FILE: MSMg01no056_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:33 2005
(563 letters)
>mm_chr5_82835218_82836181
Length = 964
Score = 816 bits (422), Expect = 0.0
Identities = 500/562 (88%), Gaps = 57/562 (10%)
Strand = Plus / Minus
Query: 2 tcagggccttgatattgcgtgtttccagaactttgggaagtaaatgtctgcggttaatct 61
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 964 tcagggccttgatattgcgtgtttccagaactgtgggaagtaaatgtctgcggttaatct 905
Query: 62 atcggaagttttattgaaattccttttagcatcccaggaggattcacacacacacacaca 121
|||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 904 atcggaagttttattgaaattccttttagcatcccaggaggatt--------------ca 859
Query: 122 cacacacacacacacacacacacacacacacacacacacacacagagagagagagagaga 181
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 cacacacacacacacacacacacacacacacacacacacacacagagag----------- 810
Query: 182 gggagagagagagagagagagagagagagaaagagagagagagagagagagagagagaga 241
|||||||||||||||||||||||||||||
Sbjct: 809 -------------------------------agagagagagagagagagagagagagaga 781
Query: 242 gagagagagagagagagggctcacacttcacacatataaaaagatttgaaaatacccttt 301
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gagagagagagagaaagggctcacacttcacacatataaaaagatttgaaaatacccttt 721
Query: 302 atctccaataaaagtcagaaggttaaggtgtttgagaagttgatttctcattaaccacaa 361
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 720 atctccaataaaagtcagaatgttaaggtgtttgagaagttgatttctcattaaccacaa 661
Query: 362 tcatctgcagtgtgtatcaagcagtaagagtttggtattcatccacagctataaaacatg 421
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tcatctgcagtgtgtagcaagcagtaagagtttggtattcatccacagctataaaacatg 601
Query: 422 ttctctgtgagccttactgtttagtatttcattaaaaatcaaaatc-aattacacctccc 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 600 ttctctgtgagccttactgtttagtatttcattaaaaatcaaaatcaaattacacctccc 541
Query: 481 tctgctagattatttaaaaagattcagttcagagaatattttgttgcttgggttgagtgt 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 540 tctgctagattatttaaaaagattcagttcagaaaatattttgttgcttgggttgagtgt 481
Query: 541 agagattacacaaatgccattc 562
||||||||||||||||||||||
Sbjct: 480 agagattacacaaatgccattc 459
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 141
Number of extensions: 53
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 964
Length adjustment: 10
Effective length of query: 553
Effective length of database: 954
Effective search space: 527562
Effective search space used: 527562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
