Query= MSMg01no056_o22.b1 MSMg01no056_o22.b1 CHROMAT_FILE:
MSMg01no056_o22.b1 PHD_FILE: MSMg01no056_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:43 2005
(591 letters)
>mm_chr5_72396192_72397184
Length = 993
Score = 1013 bits (524), Expect = 0.0
Identities = 567/582 (97%), Gaps = 4/582 (0%)
Strand = Plus / Minus
Query: 13 gaattctatactccgctgagtaaaaga-agcagggtctgttgtatgtcttgtttgttttg 71
||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 793 gaattctatactcggctgggtaaaagacagcagggtctgttgtatgtcttgtttgttttg 734
Query: 72 tctagttttccattttgagtgtgaaacaattatgccccatggaatggaatgtggccgttt 131
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 733 tctagttttccattttgagtgcgaaacaattatgccccatggaatggaacgtggccgttt 674
Query: 132 gacatctgggcagtgaacttttgtgtttttgtgtttcctcttgaaaatctgtggtgaaga 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gacatctgggcagtgaacttttgtgtttttgtgtttcctcttgaaaatctgtggtgaaga 614
Query: 192 gtaaatctgcatttataaacactttagcgttttcatatctgtagtttggaaaagcctttg 251
|||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||
Sbjct: 613 gtaaatctgcatttataagcactttagtggtttcatatctgtagtttggaaaagcctttg 554
Query: 252 cctcctgttatccaggagtattaatagattatatcataaggcctcttggtgtaagggaac 311
||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 553 cctcctgttatccgggagcattaatagattagatcataaggcctcttggtgtaagggaac 494
Query: 312 ttggtcttgattagtttaaggagataaataaacacataaattacctattcataagttctc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttggtcttgattagtttaaggagataaataaacacataaattacctattcataagttctc 434
Query: 372 caaaataaggaaaaattctagaatactttagtttctctctacttaaaaaaatcatctctt 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 caaaataaggaaaaattctagaatactttagtttctctctacttaaaaaaatcatctctt 374
Query: 432 --atacaagctaacaaagttaaagatgtaacttcaattaagataaatgtttaattatgaa 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtatacaagctaacaaagttaaagatgtaacttcaattaagataaatgtttaattatgaa 314
Query: 490 tataattaaaaattagtctaccatgaaacatttgtattttttatttattagcattaatgc 549
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 313 tataattaaaaattagtctaccatgaaacatttgtattttt-atttattagtattaatgc 255
Query: 550 aaaatacatgctcttatgccttgtttcccttgagttgtgtgg 591
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aaaatacatgctcttatgccttgtttcccttgagttgtgtgg 213
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 993
Length adjustment: 10
Effective length of query: 581
Effective length of database: 983
Effective search space: 571123
Effective search space used: 571123
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_o22.g1 MSMg01no056_o22.g1 CHROMAT_FILE:
MSMg01no056_o22.g1 PHD_FILE: MSMg01no056_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:43 2005
(574 letters)
>mm_chr5_72234546_72235519
Length = 974
Score = 936 bits (484), Expect = 0.0
Identities = 502/508 (98%), Gaps = 1/508 (0%)
Strand = Plus / Plus
Query: 65 acaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacagt 323
Query: 125 gctggaagaatcttctttacccatgggtgggttcattccctggatgagaattctggacta 184
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gctggaagaatattctttacccatgggtgggttcattccctggatgagaattctggacta 383
Query: 185 tataaaatggagaaagtgaatagattatggatgtagttgaccagatgcaccaagtttctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tataaaatggagaaagtgaatagattatggatgtagttgaccagatgcaccaagtttctg 443
Query: 245 ctaatctgactacaatgttactatgactttgaactgtgagcccagatgaactatccttca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctaatctgactacaatgttactatgactttgaactgtgagcccagatgaactatccttca 503
Query: 305 taagttgctttttt-cccaggaattttaaggcaggaacaaggaaagaggctaacacatgt 363
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taagttgctttttttcccaggaattttaaggcaggaacaaggaaagaggctaacacatgt 563
Query: 364 gcaatttaaagccacataataatgttctttattaaaaagaaaaacaataaaatattatcg 423
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcaatttaaagccgcatgataatgttctttattaaaaagaaaaacaataaaatattatcg 623
Query: 424 gcaattatttctaaaaaaccaacttcattttttcatgtgattatggttttactacaatta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcaattatttctaaaaaaccaacttcattttttcatgtgattatggttttactacaatta 683
Query: 484 aagtagatacataaaatcatatggaggaagggacaacatgacagggcttgggagaatctt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aagtagatacataaaatcatatggaggaagggacaacatgacagggcttgggagaatctt 743
Query: 544 cttttagatgtttacaataccctttcct 571
|||||||||| ||||||||||| |||||
Sbjct: 744 cttttagatgcttacaataccccttcct 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
