Query= MSMg01no057_i18.b1 MSMg01no057_i18.b1 CHROMAT_FILE:
MSMg01no057_i18.b1 PHD_FILE: MSMg01no057_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:31 2005
(371 letters)
>mm_chr5_131232430_131233200
Length = 771
Score = 642 bits (332), Expect = 0.0
Identities = 355/368 (96%), Gaps = 11/368 (2%)
Strand = Plus / Minus
Query: 4 gaattccatgggctct-cactcatatgcatgcattatagacacacacacacacacacaca 62
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gaattccatgggcactccactcatatgcatgcattatagacacacacacacacacacaca 424
Query: 63 cacacacacacacacacacacacacacacacaactaatatgcaacggcaaaggccacatg 122
|||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 423 cacacacacacacacacaca---------a-aactaatatgcaacggcaaaggccacatg 374
Query: 123 gaagttgctcaggagcagaacaagtccacatggtttctttttgcagacaagaaaatcagc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gaagttgctcaggagcagaacaagtccacatggtttctttttgcagacaagaaaatcagc 314
Query: 183 tatacgtgcttttgttttgttttcctttattgaaataaggcctcactgtgtagcccaaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tatacgtgcttttgttttgttttcctttattgaaataaggcctcactgtgtagcccaaga 254
Query: 243 tagcccagaattcataatcttcctatcccaacatcttaagtggacaccactgcacttgct 302
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 253 tagcccagaattcataatcttcctatctcaacatcttaagtggacaccactgcacttgct 194
Query: 303 gcattggaaactccactccagctactaccttcttgcattagatgaggagtgtccaggctg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gcattggaaactccactccagctactaccttcttgcattagatgaggagtgtccaggctg 134
Query: 363 gcttcaga 370
||||||||
Sbjct: 133 gcttcaga 126
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_i18.g1 MSMg01no057_i18.g1 CHROMAT_FILE:
MSMg01no057_i18.g1 PHD_FILE: MSMg01no057_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:31 2005
(524 letters)
>mm_chr5_131136910_131137833
Length = 924
Score = 907 bits (469), Expect = 0.0
Identities = 511/525 (97%), Gaps = 2/525 (0%)
Strand = Plus / Plus
Query: 1 tttgcttaactctgagccccattttttaatggggctatttagacttgtttatcagaccaa 60
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tttgtttaactctgagccccattttttaatggggctgtttagacttgtttatcagaccaa 260
Query: 61 ttcttttggggagtgggagaaattgaagttgtgtgctaagttgtatgtgagtgcccgggc 120
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 261 ttcttttggggagtgggagaaattgaagttgtgtgctaagttctatgtgagtgcccggac 320
Query: 121 tcctctggaaccgaccatctgtgaggatgactaaggatgttcactgcaggcacagtagca 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctccggaaccgaccatctgtgaggatgactaaggatgttcactgcaggcacagtagca 380
Query: 181 atctgaggaacatgtggcttttagacagtggccatttacattaacaattcccagaggtca 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctgaggatcatgtggcttttagacagtggccatttacattaacaattcccagaggtca 440
Query: 241 cctttcccaattacccattaaatcctttccttggggctaagagaggaaaacacattgtaa 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 cctttcccaattacccattaaatcctttcctcggggctaagagaggaaaacacattgtaa 500
Query: 301 ctctcagactttggagacaaataggagccttatcaaggctgcgcgccggggtctttgatg 360
||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct: 501 ctctcagactttggagacaaataggagccttatcaaggctgtgtgctggggtctttgatg 560
Query: 361 cagaggggcatggtctactgtagggttgatattgca-acccgagttgagcccttgcactg 419
|||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||
Sbjct: 561 cagaggggcatggtctactgtagggttgatattg-agacccaagttgagcccttgcactg 619
Query: 420 ccatgtgctagctctctggaattttctactcactgtttttaaccccttcttgcctaatgt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccatgtgctagctctctggaattttctactcactgtttttaaccccttcttgcctaatgt 679
Query: 480 ctatcactggtaagatgtgaactgggagaattcttcatagtgttg 524
||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 680 ctatcactgataagatgtgaactgggagaattcttcatagtgttg 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
