BAC Information

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BAC

Clone NameMSMg01-057P15
Chromosome5 (Build37)
Map Location 130,630,836 - 130,631,346
singlet/doubletsinglet
Overlap geneKctd7
Upstream geneGpr133, LOC100039355, Sfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1
Downstream geneRabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik, Caln1, Wbscr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057P15.T7 (MSMg01no057_p15.b1)MSMg01-057P15.TJ (MSMg01no057_p15.g1)
ACCAG285001AG285002
length1,136710
length of high quality
(start - end)
---519 (70 - 588)
definitionCHROMAT_FILE: MSMg01no057_p15.b1 PHD_FILE: MSMg01no057_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:07 2005CHROMAT_FILE: MSMg01no057_p15.g1 PHD_FILE: MSMg01no057_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTACCTCTTTTTCCTTTTCTCTCTTTTTCTTTTTCCCTTATATCGC
GCCGTTTTTTTTCCTCTCCCCTTTTCTCCCTTTCTCCCATAACTTATTGC
CCCTCAACCAATTTTTCACCCCGACCTCCTTCTCGCTCCTCACATTTTTC
TGCTCTTCCTTTTTTTATTTCCCCCACCTCATTTTATCCCTACCATAATA
ACCATCTTATTACTTAATGCTCTACTTATTATCACGCACCTTCCACTTAT
TACCATAATGCATAACTATATTCTATACCTTTGCGTATACACGTTTCATA
TATCCCGCGTCATACCATTGACCGTAATCCATCCGTCTCAATCTTTACCA
TTCGCGCACGTCAGGCTATCCCTATCACGACCCAACATGATCTTCTTCCA
CTGCCGTACGCGATATCGTTTCTTGTATTTCTATTCACTATTCATATGCA
CTATAATGACGCGCGCGATTATCGACACACACTGCACGGGCCGTACCGGA
CATATCCGTGCGTATGACGTGATGTCAATCCTCACTCGCGTGTATGCCAT
TCGTACTGTCCGTCGCTGAACTTTTTCCTTATATCACAGCTTTCTTCGCG
CCGCGATTTATCCGTGTGCTGCCCATGGTCCTGTTGACGGTCTCGGCGTT
GCGGTGTTATTCGAGTGCGCACGCGTATGCACCGGAGAACGACCCCCCTT
CCTCATTAGATAATACGACACGTTACTTACACTCTAATTGCATATCATAT
ATCACATACGGCATCGCCTGCGTAATGCGAGAATATAGGAATCGACGATT
AAAATGGGATCGCGCCCGGTATTAATCGACTCGCAAATTGGTCATTCCGC
GTGCAACCATTACATGTGTGGTACTATACATCGCTCGTATAATACGATAT
ATGCGTGCAATTGCTCTGCGTGTAACAAAGACACGTGTATACTCTGATAT
AAATATGTTTACTTGTGGAGACAGGTAATTTGGCGAATAACTAGCGGACC
GTGGTAACGAACAGCGGATCAACAGAGACTGATGAGACGAGTATGTAATG
GACGTATCAACGAGCGACAGGCAAGGGTGTATGCTGCATTGGAGGTATAC
GGCGTAGCACTATCGTAGTTATGGCGCGCGCGGCCG
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTCCCCCTGGGATGTGCTGTCTTCCAGGATA
GCTCTCTTGCCCTCTGTCTTCCTGTTTCCACTCTGTTTTACTTTGCATTG
CGTTCTGCTGTGGCTAATGTTACACCATGTGCTGCTATCAAAATCTTTTC
CCCAACGAGTGAGCAAGCGTGTCTCCCAGGAGAAAAGATCGCCCAAAGGA
AAAGAGGAGGTGAACTCAAGGGTTGTGGGCGCAAGCCAGACAAGAGGTGT
TGATTGACAGGACACTCACATACTTGTGAGAAGGTATTTCCTGTGAGTCA
AGAAGCTTTTCCTCACAAGTCTTTTGATCAGGGCCTGGGCAATTGCAACC
GGAAAAAGGACCACACAGGCCAAACTACTTCCCACAGATATGACCCTTTT
ATTCAGAAGTCACCCCAGCCACCACATGCAACAGCGCATTTCAGACTTGG
CCTTGGCTTCTCGTGAGAGAGTCAAAACAGGCTATGAATTCTTTTATTCC
ATTTAAGAGAAGTTCCAAGAGGGAAGAGTGTCCAAGTAGTGTCTAGTGAG
GATAGAGTCCAAGTAGCAAAGATACACTTGGACATACTTGGTTTTTGGCG
GCGCTGAAGAGGGAACCCAGCGCCTCGTGCACACTAAGTTGATATTCTAC
CATGAAACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_p15.g1 MSMg01no057_p15.g1 CHROMAT_FILE:
MSMg01no057_p15.g1 PHD_FILE: MSMg01no057_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:07 2005
         (519 letters)



>mm_chr5_130630636_130631556
          Length = 921

 Score =  901 bits (466), Expect = 0.0
 Identities = 500/512 (97%), Gaps = 4/512 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccccctgggatgtgctgtcttccaggatagctctcttgccctctgtcttcctgtttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ctccccctgggatgtgctgtcttccaggatagctctcttgccctctgtcttcctgtttcc 652

                                                                       
Query: 61  actc--tgttttactttgcattgcgttctgctgtggctaatgttacaccatgtgctgcta 118
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 actctatgttttactttgcattgcgttctgctgtggctaatgttacaccatgtgctgcta 592

                                                                       
Query: 119 tcaaaatcttttccccaacgagtgagcaagcgtgtctcccaggagaaaagatcgcccaaa 178
           ||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||
Sbjct: 591 tcaaaatcttttccccaacaagtgagcaaacgtgtctcccaggagaaaagat-gcccaaa 533

                                                                       
Query: 179 ggaaaagaggaggtgaactcaagggttgtgggcgcaagccagacaagaggtgttgattga 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ggaaaagaggaggtgaactcaagggttgtgggcgcaagccagacaagaggtgttgattga 473

                                                                       
Query: 239 caggacactcacatacttgtgagaaggtatttcctgtgagtcaagaagcttttcctcaca 298
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 caggacacacacatacttgtgagaaggtatttcctgtgagtcaagaagcttttcctcaca 413

                                                                       
Query: 299 agtcttttgatcagggcctgggcaattgcaaccggaaaaaggaccacacaggccaaacta 358
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 412 agtcttttgatcagggcctgggcaattgcaaccggaaaaaggatcaaacaggccaaacta 353

                                                                       
Query: 359 cttcccacagatatgacccttttattcagaagtca-ccccagccaccacatgcaacagcg 417
           ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
Sbjct: 352 cttcccacagatatgacccttttattcagaagtcacccccagccaccacattcaacagtg 293

                                                                       
Query: 418 catttcagacttggccttggcttctcgtgagagagtcaaaacaggctatgaattctttta 477
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 292 catttcagacttggccttggcttctcgtgagagagccaaaacaggctatgaattctttta 233

                                           
Query: 478 ttccatttaagagaagttccaagagggaagag 509
           ||||||||||||||||||||||||||||||||
Sbjct: 232 ttccatttaagagaagttccaagagggaagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 921
Length adjustment: 10
Effective length of query: 509
Effective length of database: 911
Effective search space:   463699
Effective search space used:   463699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)